MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-10-P1b-v2

Family name MIR-10 (all species)
Seed CCCUGUA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-10b
Paralogues Rno-Mir-10-P1b-v1  Rno-Mir-10-P1c-v1  Rno-Mir-10-P1c-v2  Rno-Mir-10-P2b  Rno-Mir-10-P2c  Rno-Mir-10-P2d  Rno-Mir-10-P3b  Rno-Mir-10-P3c  Rno-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1b-v1  Aca-Mir-10-P1b-v2  Ami-Mir-10-P1b-v1  Ami-Mir-10-P1b-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Bta-Mir-10-P1b-v1  Bta-Mir-10-P1b-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1b-v1  Cfa-Mir-10-P1b-v2  Cgi-Mir-10-P1  Cli-Mir-10-P1b-v1  Cli-Mir-10-P1b-v2  Cmi-Mir-10-P1b-v1  Cmi-Mir-10-P1b-v2  Cpi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v2  Cpo-Mir-10-P1b-v1  Cpo-Mir-10-P1b-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1b-v1  Dno-Mir-10-P1b-v2  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b1-v2  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1b2-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Ete-Mir-10-P1b-v1  Ete-Mir-10-P1b-v2  Gga-Mir-10-P1b-v1  Gga-Mir-10-P1b-v2  Gja-Mir-10-P1b-v1  Gja-Mir-10-P1b-v2  Gmo-Mir-10-P1b1-v1  Gmo-Mir-10-P1b1-v2  Gmo-Mir-10-P1b2-v1  Gmo-Mir-10-P1b2-v2  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hsa-Mir-10-P1b-v1  Hsa-Mir-10-P1b-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lch-Mir-10-P1b  Lgi-Mir-10-P1  Loc-Mir-10-P1b-v1  Loc-Mir-10-P1b-v2  Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b1-v2  Mal-Mir-10-P1b2  Mdo-Mir-10-P1b-v1  Mdo-Mir-10-P1b-v2  Mml-Mir-10-P1b-v1  Mml-Mir-10-P1b-v2  Mmu-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v2  Mun-Mir-10-P1b-v1  Mun-Mir-10-P1b-v2  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1b-v1  Oan-Mir-10-P1b-v2  Ocu-Mir-10-P1b-v1  Ocu-Mir-10-P1b-v2  Pbv-Mir-10-P1b-v1  Pbv-Mir-10-P1b-v2  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Sha-Mir-10-P1b-v1  Sha-Mir-10-P1b-v2  Sko-Mir-10-P1  Spt-Mir-10-P1b  Spu-Mir-10-P1  Sto-Mir-10-P1b-v1  Sto-Mir-10-P1b-v2  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tgu-Mir-10-P1b-v1  Tgu-Mir-10-P1b-v2  Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b1-v2  Tni-Mir-10-P1b2  Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b3-v2  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1b4-v2  Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1b-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(rn6)
chr3: 61648004-61648063 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1b-v2)
Mir-10-P1b-v1 chr3: 61648003-61648064 [+] UCSC Ensembl
Mir-10-P1b-v2 chr3: 61648004-61648063 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACCCAAAGUUGUAACGUUGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGGUACCCACAUAGUCACAGAUUCGAUUCUAGGGGAAUAUAUGGUCGAUGCAAAAACUUCAUAUAUAU
Get precursor sequence
Structure
        10          20        30        40        50          
GGACCCAAAGUUGUAAC--|   U        A    G     C          UGGUACC 
                   GUUG CUAUAUAU CCCU UAGAA CGAAUUUGUG       \
                   UAGC GGUAUAUA GGGG AUCUU GCUUAGACAC       C
UAUAUAUACUUCAAAAACG^   U        A    -     A          UGAUACA 
.       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-10-P1b-v2_5p

mirBase accessionMIMAT0000783
Sequence
0- ACCCUGUAGAACCGAAUUUGUG -22
Get sequence
Proposed targets microrna.org: MIMAT0000783
TargetScanVert: rno-miR-10b-5p
miRDB: MIMAT0000783
Star sequence

Rno-Mir-10-P1b-v2_3p*

mirBase accessionMIMAT0017092
Sequence
39- CAGAUUCGAUUCUAGGGGAAU -60
Get sequence
Proposed targets TargetScanVert: rno-miR-10b-3p
miRDB: MIMAT0017092