MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-10-P1c

Family name MIR-10 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-10a
Paralogues Ami-Mir-10-P1b-v1  Ami-Mir-10-P1c-v1  Ami-Mir-10-P1d-v1  Ami-Mir-10-P2b  Ami-Mir-10-P2c  Ami-Mir-10-P2d  Ami-Mir-10-P3b  Ami-Mir-10-P3c  Ami-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1c-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1c-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1c-v1  Cja-Mir-10-P1c-v1  Cli-Mir-10-P1c-v1  Cmi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1c-v1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c2-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1c-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1c-v1  Gga-Mir-10-P1c-v1  Gja-Mir-10-P1c-v1  Gmo-Mir-10-P1c1-v1  Gmo-Mir-10-P1c2-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Hsa-Mir-10-P1c-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1c-v1  Lch-Mir-10-P1c  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1c-v1  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2b-v1  Mdo-Mir-10-P1c-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1c-v1  Mmr-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v1  Mom-Mir-10-P1  Mun-Mir-10-P1c-v1  Neu-Mir-10-P1c-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1c-v1  Ocu-Mir-10-P1c-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1c-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1c-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1c-v1  Rph-Mir-10-P1  Sha-Mir-10-P1c-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sto-Mir-10-P1c-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1c-v1  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c2-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c4-v1  Xtr-Mir-10-P1c-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017708231.1: 3410198-3410257 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-10-P1c-v2)		 Mir-10-P1c-v1 NW_017708231.1: 3410197-3410258 [-] UCSC
Mir-10-P1c-v2 NW_017708231.1: 3410198-3410257 [-] UCSC
Variant

Ami-Mir-10-P1c-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
CCAAGGAAGAUGCAUCUGUCUUCUAUAUGUACCCUGUAGAUCCGAAUUUGUGUAAAGGAAGUUGCGUCACAAAUUCGUAUCUAGGGGAAUAUGUAGUUGACACAAACACUACAGGUCACU
Get precursor sequence
Structure
        10          20        30        40        50          
CCAAGGAAGAUGCAUCU--|  UU        A    G     C          UAAAGGA 
                   GUC  CUAUAUGU CCCU UAGAU CGAAUUUGUG       \
                   CAG  GAUGUAUA GGGG AUCUA GCUUAAACAC       A
UCACUGGACAUCACAAACA^  UU        A    -     U          UGCGUUG 
.       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
To
Mature sequence

Ami-Mir-10-P1c-v2_5p
mirBase accessionMIMAT0038030
Sequence 
0- ACCCUGUAGAUCCGAAUUUGUG -22
Get sequence
Star sequence

Ami-Mir-10-P1c-v2_3p*
mirBase accessionMIMAT0038031
Sequence 
39- CAAAUUCGUAUCUAGGGGAAU -60
Get sequence
Variant

Ami-Mir-10-P1c-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
ACCAAGGAAGAUGCAUCUGUCUUCUAUAUGUACCCUGUAGAUCCGAAUUUGUGUAAAGGAAGUUGCGUCACAAAUUCGUAUCUAGGGGAAUAUGUAGUUGACACAAACACUACAGGUCACUA
Get precursor sequence
Structure
        10          20        30        40        50        60 
ACCAAGGAAGAUGCAUC--|   UU        A    G     C         GUAAAGGA 
                   UGUC  CUAUAUGU CCCU UAGAU CGAAUUUGU        \
                   ACAG  GAUGUAUA GGGG AUCUA GCUUAAACA        A
AUCACUGGACAUCACAAAC^   UU        A    -     U         CUGCGUUG 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ami-Mir-10-P1c-v1_5p
mirBase accessionMIMAT0038030
Sequence 
0- UACCCUGUAGAUCCGAAUUUGU -22
Get sequence
Star sequence

Ami-Mir-10-P1c-v1_3p* (predicted)
mirBase accessionMIMAT0038031
Sequence 
41- AAAUUCGUAUCUAGGGGAAUA -62
Get sequence