MirGeneDB ID | Xla-Mir-10-P1b4 |
Family name |
MIR-10 (all species) |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-10-P1b3-v1
Xla-Mir-10-P1b4-v1
Xla-Mir-10-P1c3-v1
Xla-Mir-10-P1c4-v1
Xla-Mir-10-P1d3-v1
Xla-Mir-10-P1d4-v1
Xla-Mir-10-P2b1
Xla-Mir-10-P2b2
Xla-Mir-10-P2c3
Xla-Mir-10-P2c4
Xla-Mir-10-P3b
Xla-Mir-10-P3c3
Xla-Mir-10-P3c4
Xla-Mir-10-P3d3
Xla-Mir-10-P3d4
|
Orthologues |
Aae-Mir-10-P1-v1
Aca-Mir-10-P1b-v1
Adi-Mir-10
Aga-Mir-10-P1-v1
Agr-Mir-10-P1
Ami-Mir-10-P1b-v1
Asp-Mir-10
Asu-Mir-10-P1
Bfl-Mir-10-P1-v1
Bge-Mir-10-P1-v1
Bla-Mir-10-P1-v1
Bta-Mir-10-P1b-v1
Cbr-Mir-10-P1
Cel-Mir-10-P1
Cfa-Mir-10-P1b-v1
Cja-Mir-10-P1b-v1
Cli-Mir-10-P1b-v1
Cmi-Mir-10-P1b-v1
Cpi-Mir-10-P1b-v1
Cpo-Mir-10-P1b-v1
Cte-Mir-10-P1
Dan-Mir-10-P1
Dgr-Mir-10-P1
Dlo-Mir-10-P1-v1
Dma-Mir-10-P1-v1
Dme-Mir-10-P1
Dmo-Mir-10-P1
Dno-Mir-10-P1b-v1
Dpu-Mir-10-P1-v1
Dsi-Mir-10-P1
Dya-Mir-10-P1
Eba-Mir-10-P1
Eca-Mir-10-P1b-v1
Efe-Mir-10-P1
Egr-Mir-10-P1
Ete-Mir-10-P1b-v1
Gga-Mir-10-P1b-v1
Gja-Mir-10-P1b-v1
Gpa-Mir-10-P1
Gsp-Mir-10-P1
Hme-Mir-10-P1-v1
Hmi-Mir-10-P1b
Hru-Mir-10-P1
Hsa-Mir-10-P1b-v1
Isc-Mir-10-P1-v1
Laf-Mir-10-P1b
Lch-Mir-10-P1b
Lgi-Mir-10-P1
Lhy-Mir-10-P1
Llo-Mir-10-P1
Loc-Mir-10-P1b-v1
Mdo-Mir-10-P1b-v1
Mgi-Mir-10-P1
Mml-Mir-10-P1b-v1
Mmr-Mir-10-P1b-v1
Mmu-Mir-10-P1b-v1
Mom-Mir-10-P1
Mun-Mir-10-P1b-v1
Neu-Mir-10-P1b-v1
Npo-Mir-10-P1
Nve-Mir-10
Oan-Mir-10-P1b-v1
Ocu-Mir-10-P1b-v1
Ofu-Mir-10-P1
Pab-Mir-10-P1b-v1
Pau-Mir-10-P1
Pbv-Mir-10-P1b-v1
Pca-Mir-10-P1
Pdu-Mir-10-P1
Pfl-Mir-10-P1
Pmi-Mir-10-P1
Pve-Mir-10-P1
Rno-Mir-10-P1b-v1
Rph-Mir-10-P1
Sha-Mir-10-P1b-v1
Sko-Mir-10-P1
Sma-Mir-10-P1
Snu-Mir-10-P1
Spt-Mir-10-P1b
Spu-Mir-10-P1
Sto-Mir-10-P1b-v1
Tca-Mir-10-P1-v1
Tgu-Mir-10-P1b-v1
War-Mir-10-P1
Xbo-Mir-10-P1
Xtr-Mir-10-P1b-v1
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030741.1: 62207499-62207556 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-10-P1b4-v2) |
Mir-10-P1b4-v1
NC_030741.1: 62207498-62207557 [-]
UCSC
Ensembl
Mir-10-P1b4-v2
NC_030741.1: 62207499-62207556 [-]
UCSC
Ensembl
|
Variant | Xla-Mir-10-P1b4-v2 |
Seed |
CCCUGUA |
Precursor (pre-Mir +30nt flank) |
ACGUGCAUUAUUAAUACGUUGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGGUUUUAACAGUCACAGAUUCGAUUCUAGGGGGAUAUAUGGUCGAUGCAAAUACUUCGAUUCCAG
Get precursor sequence
|
Structure | 10 20 30 40 50
ACGUGCAUUAUUAAUAC--| U A G C UGGUUU
GUUG CUAUAUGU CCCU UAGAA CGAAUUUGUG \
UAGC GGUAUAUA GGGG AUCUU GCUUAGACAC U
GACCUUAGCUUCAUAAACG^ U - G A UGACAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Xla-Mir-10-P1b4-v2_5p |
mirBase accession | None |
Sequence |
0- ACCCUGUAGAACCGAAUUUGUGU -23
Get sequence
|
Star sequence |
Xla-Mir-10-P1b4-v2_3p* |
mirBase accession | None |
Sequence |
36- ACAGAUUCGAUUCUAGGGGGAU -58
Get sequence
|
Variant | Xla-Mir-10-P1b4-v1 |
Seed |
ACCCUGU |
Precursor (pre-Mir +30nt flank) |
AACGUGCAUUAUUAAUACGUUGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGGUUUUAACAGUCACAGAUUCGAUUCUAGGGGGAUAUAUGGUCGAUGCAAAUACUUCGAUUCCAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
AACGUGCAUUAUUAAUA--| U A G C UGGUUU
CGUUG CUAUAUGU CCCU UAGAA CGAAUUUGUG \
GUAGC GGUAUAUA GGGG AUCUU GCUUAGACAC U
CGACCUUAGCUUCAUAAAC^ U - G A UGACAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xla-Mir-10-P1b4-v1_5p |
mirBase accession | None |
Sequence |
0- UACCCUGUAGAACCGAAUUUGUG -23
Get sequence
|
Star sequence |
Xla-Mir-10-P1b4-v1_3p* |
mirBase accession | None |
Sequence |
38- CAGAUUCGAUUCUAGGGGGAUA -60
Get sequence
|