MirGeneDB ID | Mun-Mir-10-P1c |
Family name |
MIR-10 (all species) |
Species |
Microcaecilia (Microcaecilia unicolor) |
MiRBase ID |
|
Paralogues |
Mun-Mir-10-P1b-v1
Mun-Mir-10-P1c-v1
Mun-Mir-10-P1d-v1
Mun-Mir-10-P2b
Mun-Mir-10-P2c
Mun-Mir-10-P2d
Mun-Mir-10-P3b
Mun-Mir-10-P3c
Mun-Mir-10-P3d
|
Orthologues |
Aae-Mir-10-P1-v1
Aca-Mir-10-P1c-v1
Adi-Mir-10
Aga-Mir-10-P1-v1
Agr-Mir-10-P1
Ami-Mir-10-P1c-v1
Asp-Mir-10
Asu-Mir-10-P1
Bfl-Mir-10-P1-v1
Bge-Mir-10-P1-v1
Bla-Mir-10-P1-v1
Bta-Mir-10-P1c-v1
Cbr-Mir-10-P1
Cel-Mir-10-P1
Cfa-Mir-10-P1c-v1
Cja-Mir-10-P1c-v1
Cli-Mir-10-P1c-v1
Cmi-Mir-10-P1c-v1
Cpi-Mir-10-P1c-v1
Cpo-Mir-10-P1c-v1
Cte-Mir-10-P1
Dan-Mir-10-P1
Dgr-Mir-10-P1
Dlo-Mir-10-P1-v1
Dma-Mir-10-P1-v1
Dme-Mir-10-P1
Dmo-Mir-10-P1
Dno-Mir-10-P1c-v1
Dpu-Mir-10-P1-v1
Dre-Mir-10-P1c1-v1
Dre-Mir-10-P1c2-v1
Dsi-Mir-10-P1
Dya-Mir-10-P1
Eba-Mir-10-P1
Eca-Mir-10-P1c-v1
Efe-Mir-10-P1
Egr-Mir-10-P1
Ete-Mir-10-P1c-v1
Gga-Mir-10-P1c-v1
Gja-Mir-10-P1c-v1
Gmo-Mir-10-P1c1-v1
Gmo-Mir-10-P1c2-v1
Gpa-Mir-10-P1
Gsp-Mir-10-P1
Hme-Mir-10-P1-v1
Hru-Mir-10-P1
Hsa-Mir-10-P1c-v1
Isc-Mir-10-P1-v1
Laf-Mir-10-P1c-v1
Lch-Mir-10-P1c
Lgi-Mir-10-P1
Lhy-Mir-10-P1
Llo-Mir-10-P1
Loc-Mir-10-P1c-v1
Mal-Mir-10-P1c1-v1
Mal-Mir-10-P1c2a-v1
Mal-Mir-10-P1c2b-v1
Mdo-Mir-10-P1c-v1
Mgi-Mir-10-P1
Mml-Mir-10-P1c-v1
Mmr-Mir-10-P1c-v1
Mmu-Mir-10-P1c-v1
Mom-Mir-10-P1
Neu-Mir-10-P1c-v1
Npo-Mir-10-P1
Nve-Mir-10
Oan-Mir-10-P1c-v1
Ocu-Mir-10-P1c-v1
Ofu-Mir-10-P1
Pab-Mir-10-P1c-v1
Pau-Mir-10-P1
Pbv-Mir-10-P1c-v1
Pca-Mir-10-P1
Pdu-Mir-10-P1
Pfl-Mir-10-P1
Pmi-Mir-10-P1
Pve-Mir-10-P1
Rno-Mir-10-P1c-v1
Rph-Mir-10-P1
Sha-Mir-10-P1c-v1
Sko-Mir-10-P1
Sma-Mir-10-P1
Snu-Mir-10-P1
Spt-Mir-10-P1c
Spu-Mir-10-P1
Sto-Mir-10-P1c-v1
Tca-Mir-10-P1-v1
Tgu-Mir-10-P1c-v1
Tni-Mir-10-P1c1-v1
Tni-Mir-10-P1c2-v1
War-Mir-10-P1
Xbo-Mir-10-P1
Xla-Mir-10-P1c3-v1
Xla-Mir-10-P1c4-v1
Xtr-Mir-10-P1c-v1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCA_901765095.2_aMicUni1.2) |
LR594643.1: 63956966-63957026 [+]
|
Clustered miRNAs (< 50kb from Mir-10-P1c-v2) |
Mir-10-P1c-v1
LR594643.1: 63956965-63957027 [+]
Mir-10-P1c-v2
LR594643.1: 63956966-63957026 [+]
|
Variant | Mun-Mir-10-P1c-v2 |
Seed |
CCCUGUA |
Precursor (pre-Mir +30nt flank) |
UCAAAAGGAGAAAAUCUGUCUUCUAUAUGUACCCUGUAGAUCCGAAUUUGUGUUAAGAAGAUUGAUGUCACAAAUUCGUAUCUAGGGGAAUAUGUAGUUGACAUAAACACUACAGUGACUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCAAAAGGAGAAAAUCU--| UU A G C UUAAGAA
GUC CUAUAUGU CCCU UAGAU CGAAUUUGUG G
CAG GAUGUAUA GGGG AUCUA GCUUAAACAC A
CUCAGUGACAUCACAAAUA^ UU A - U UGUAGUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Mun-Mir-10-P1c-v2_5p |
mirBase accession | None |
Sequence |
0- ACCCUGUAGAUCCGAAUUUGUGU -23
Get sequence
|
Star sequence |
Mun-Mir-10-P1c-v2_3p* |
mirBase accession | None |
Sequence |
39- ACAAAUUCGUAUCUAGGGGAAU -61
Get sequence
|
Variant | Mun-Mir-10-P1c-v1 |
Seed |
ACCCUGU |
Precursor (pre-Mir +30nt flank) |
AUCAAAAGGAGAAAAUCUGUCUUCUAUAUGUACCCUGUAGAUCCGAAUUUGUGUUAAGAAGAUUGAUGUCACAAAUUCGUAUCUAGGGGAAUAUGUAGUUGACAUAAACACUACAGUGACUCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUCAAAAGGAGAAAAUC--| UU A G C UUAAGAA
UGUC CUAUAUGU CCCU UAGAU CGAAUUUGUG G
ACAG GAUGUAUA GGGG AUCUA GCUUAAACAC A
ACUCAGUGACAUCACAAAU^ UU A - U UGUAGUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Mun-Mir-10-P1c-v1_5p |
mirBase accession | None |
Sequence |
0- UACCCUGUAGAUCCGAAUUUGUG -23
Get sequence
|
Star sequence |
Mun-Mir-10-P1c-v1_3p* |
mirBase accession | None |
Sequence |
41- CAAAUUCGUAUCUAGGGGAAUA -63
Get sequence
|