MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-10-P1c2a

Family name MIR-10 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b2  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2b-v1  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P2c2  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mal-Mir-10-P3c2  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1c-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1c-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1c-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1c-v1  Cja-Mir-10-P1c-v1  Cli-Mir-10-P1c-v1  Cmi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1c-v1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1c2-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1c-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1c-v1  Gga-Mir-10-P1c-v1  Gja-Mir-10-P1c-v1  Gmo-Mir-10-P1c2-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Hsa-Mir-10-P1c-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1c-v1  Lch-Mir-10-P1c  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1c-v1  Mdo-Mir-10-P1c-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1c-v1  Mmr-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v1  Mom-Mir-10-P1  Mun-Mir-10-P1c-v1  Neu-Mir-10-P1c-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1c-v1  Ocu-Mir-10-P1c-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1c-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1c-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1c-v1  Rph-Mir-10-P1  Sha-Mir-10-P1c-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sto-Mir-10-P1c-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1c-v1  Tni-Mir-10-P1c2-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1c-v1 
Node of Origin (locus) M. albus
Node of Origin (family) Eumetazoa
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884755.1: 566953-567013 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1c2a-v2)		 Mir-10-P1c2b-v1 KV884755.1: 546072-546134 [-] UCSC Ensembl
Mir-10-P1c2b-v2 KV884755.1: 546073-546133 [-] UCSC Ensembl
Mir-10-P1c2a-v1 KV884755.1: 566952-567014 [-] UCSC Ensembl
Mir-10-P1c2a-v2 KV884755.1: 566953-567013 [-] UCSC Ensembl
Variant

Mal-Mir-10-P1c2a-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
GCAGAGCCUGACCACCUGUCACCUAUACACACCCUGUAGAUCCGAAUUUGUGUAAAUACAACGGCAGCCACAAGUUCGCAUCUUGGGGAGUUUGUAGGUGAUGACACUUCACCUCGGGGAG
Get precursor sequence
Structure
        10          20        30        40        50        60
GCAGAGCCUGACCACCU--|         C  A     U    C          UAAAUAC 
                   GUCACCUAUA AC CCCUG AGAU CGAAUUUGUG       A
                   UAGUGGAUGU UG GGGGU UCUA GCUUGAACAC       A
GAGGGGCUCCACUUCACAG^         U  A     -    C          CGACGGC 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-10-P1c2a-v2_5p
mirBase accessionNone
Sequence 
0- ACCCUGUAGAUCCGAAUUUGUGU -23
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Star sequence

Mal-Mir-10-P1c2a-v2_3p*
mirBase accessionNone
Sequence 
39- ACAAGUUCGCAUCUUGGGGAGU -61
Get sequence
Variant

Mal-Mir-10-P1c2a-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
CGCAGAGCCUGACCACCUGUCACCUAUACACACCCUGUAGAUCCGAAUUUGUGUAAAUACAACGGCAGCCACAAGUUCGCAUCUUGGGGAGUUUGUAGGUGAUGACACUUCACCUCGGGGAGA
Get precursor sequence
Structure
        10          20        30        40        50        60 
CGCAGAGCCUGACCACCU--|         C  A     U    C          UAAAUAC 
                    GUCACCUAUA AC CCCUG AGAU CGAAUUUGUG       A
                    UAGUGGAUGU UG GGGGU UCUA GCUUGAACAC       A
AGAGGGGCUCCACUUCACAG^         U  A     -    C          CGACGGC 
 120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-10-P1c2a-v1_5p (predicted)
mirBase accessionNone
Sequence 
0- CACCCUGUAGAUCCGAAUUUGUG -23
Get sequence
Star sequence

Mal-Mir-10-P1c2a-v1_3p*
mirBase accessionNone
Sequence 
41- CAAGUUCGCAUCUUGGGGAGUU -63
Get sequence