MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-124-P4

Family name MIR-124 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-124-P1-v1  Gja-Mir-124-P2-v1  Gja-Mir-124-P3-v1  Gja-Mir-124-P4-v1 
Orthologues Aae-Mir-124  Aca-Mir-124-P4-v1  Aga-Mir-124  Agr-Mir-124  Ami-Mir-124-P4-v1  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Cel-Mir-124  Cmi-Mir-124-P4  Cpi-Mir-124-P4-v1  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dre-Mir-124-P4-v1  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Esc-Mir-124  Gga-Mir-124-P4-v1  Gmo-Mir-124-P4-v1  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P4  Lhy-Mir-124  Llo-Mir-124  Loc-Mir-124-P4-v1  Mal-Mir-124-P4-v1  Mgi-Mir-124  Mom-Mir-124  Mun-Mir-124-P4-v1  Npo-Mir-124  Oan-Mir-124-P4-v1  Obi-Mir-124  Ofu-Mir-124  Ovu-Mir-124  Pau-Mir-124  Pbv-Mir-124-P4a  Pbv-Mir-124-P4b-v1  Pcr-Mir-124-o4  Pdu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Pve-Mir-124  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spt-Mir-124-P4  Spu-Mir-124  Sro-Mir-124  Sto-Mir-124-P4-v1  Tca-Mir-124  Tni-Mir-124-P4-v1  War-Mir-124  Xbo-Mir-124 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015174874.1: 301873-301931 [-]
Clustered miRNAs
(< 50kb from Mir-124-P4-v2)		 Mir-124-P4-v1 NW_015174874.1: 301872-301931 [-]
Mir-124-P4-v2 NW_015174874.1: 301873-301931 [-]
Variant

Gja-Mir-124-P4-v2
Seed UAAGGCA
Precursor
(pre-Mir +30nt flank)		 
UACCUGCUUCGCCCCUCGGCUUAAGCCCUUCGUGUUCACAGCGGACCUUGAUUUAAUUUCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCCGCCCUCCUACCCUUUUCUU
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Structure
        10          20        30        40        50         
UACCUGCUUCGCCCCUC--|    AAGCC   C        A   GA        UAAUU 
                   GGCUU     CUU GUGUUCAC GCG  CCUUGAUU     U
                   CCGAA     GAA CGUAAGUG CGC  GGAAUUAA     C
UUCUUUUCCCAUCCUCCCG^    GAGA-   C        G   AC        CAUAA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gja-Mir-124-P4-v2_5p*
mirBase accessionNone
Sequence 
0- CGUGUUCACAGCGGACCUUGAUU -23
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Mature sequence

Gja-Mir-124-P4-v2_3p
mirBase accessionNone
Sequence 
37- UUAAGGCACGCGGUGAAUGCCA -59
Get sequence
Variant

Gja-Mir-124-P4-v1
Seed AAGGCAC
Precursor
(pre-Mir +30nt flank)		 
UACCUGCUUCGCCCCUCGGCUUAAGCCCUUCGUGUUCACAGCGGACCUUGAUUUAAUUUCAAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGAAGCCGCCCUCCUACCCUUUUCUUU
Get precursor sequence
Structure
        10           20        30        40        50         
UACCUGCUUCGCCCCUC---|    AAGCC   C        A   GA       UUAAUU 
                    GGCUU     CUU GUGUUCAC GCG  CCUUGAU      U
                    CCGAA     GAA CGUAAGUG CGC  GGAAUUA      C
UUUCUUUUCCCAUCCUCCCG^    GAGA-   C        G   AC       ACAUAA 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gja-Mir-124-P4-v1_5p*
mirBase accessionNone
Sequence 
0- CGUGUUCACAGCGGACCUUGAU -22
Get sequence
Mature sequence

Gja-Mir-124-P4-v1_3p
mirBase accessionNone
Sequence 
38- UAAGGCACGCGGUGAAUGCCAA -60
Get sequence