MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-10-P1d

Family name MIR-10 (all species)
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-10c
Paralogues Cli-Mir-10-P1b-v1  Cli-Mir-10-P1c-v1  Cli-Mir-10-P1d-v1  Cli-Mir-10-P2c  Cli-Mir-10-P2d  Cli-Mir-10-P3c  Cli-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1d-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1d-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cmi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1d1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gga-Mir-10-P1d-v1  Gja-Mir-10-P1d-v1  Gmo-Mir-10-P1d1-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1d-v1  Mal-Mir-10-P1d1-v1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Mun-Mir-10-P1d-v1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pbv-Mir-10-P1d-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tni-Mir-10-P1d1-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d4-v1  Xtr-Mir-10-P1d-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(colLiv2)		 scaffold922: 255117-255176 [+]
Clustered miRNAs
(< 50kb from Mir-10-P1d-v2)		 Mir-10-P1d-v1 scaffold922: 255116-255177 [+]
Mir-10-P1d-v2 scaffold922: 255117-255176 [+]
Variant

Cli-Mir-10-P1d-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
CCCCCCCAACCCUCCCCGUCUCCUAUAUGUACCCUGUAGACUCGAAUUUGUGUGAGCGUCUCCCAGUCACAAAUUCGUCUCUAGGGGAAUAUAUGGGCGAUGCCAGAGCCUUGGAAAGUU
Get precursor sequence
Structure
        10          20        30        40        50          
CCCCCCCAACCCUCCCC--|  U         A    G    CU          UGAGCGU 
                   GUC CCUAUAUGU CCCU UAGA  CGAAUUUGUG       \
                   UAG GGGUAUAUA GGGG AUCU  GCUUAAACAC       C
UUGAAAGGUUCCGAGACCG^  C         A    -    CU          UGACCCU 
.       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-10-P1d-v2_5p
mirBase accessionMIMAT0038408
Sequence 
0- ACCCUGUAGACUCGAAUUUGUGU -23
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Star sequence

Cli-Mir-10-P1d-v2_3p*
mirBase accessionMIMAT0038409
Sequence 
38- ACAAAUUCGUCUCUAGGGGAAU -60
Get sequence
Variant

Cli-Mir-10-P1d-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
GCCCCCCCAACCCUCCCCGUCUCCUAUAUGUACCCUGUAGACUCGAAUUUGUGUGAGCGUCUCCCAGUCACAAAUUCGUCUCUAGGGGAAUAUAUGGGCGAUGCCAGAGCCUUGGAAAGUUC
Get precursor sequence
Structure
        10          20        30        40        50        60 
GCCCCCCCAACCCUCCC--|   U         A    G    CU          UGAGCGU 
                   CGUC CCUAUAUGU CCCU UAGA  CGAAUUUGUG       \
                   GUAG GGGUAUAUA GGGG AUCU  GCUUAAACAC       C
CUUGAAAGGUUCCGAGACC^   C         A    -    CU          UGACCCU 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-10-P1d-v1_5p
mirBase accessionMIMAT0038408
Sequence 
0- UACCCUGUAGACUCGAAUUUGUG -23
Get sequence
Star sequence

Cli-Mir-10-P1d-v1_3p*
mirBase accessionMIMAT0038409
Sequence 
40- CAAAUUCGUCUCUAGGGGAAUA -62
Get sequence