MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-194-P4

Family name MIR-194 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-194-2
Paralogues Ami-Mir-194-P2 
Orthologues Aca-Mir-194-P4  Bta-Mir-194-P4  Cfa-Mir-194-P4  Cja-Mir-194-P4  Cpi-Mir-194-P4  Cpo-Mir-194-P4  Dno-Mir-194-P4  Dre-Mir-194-P4a  Dre-Mir-194-P4b  Eca-Mir-194-P4  Ete-Mir-194-P4  Gja-Mir-194-P4  Gmo-Mir-194-P4a  Gmo-Mir-194-P4b  Hsa-Mir-194-P4  Lch-Mir-194-P4  Loc-Mir-194-P4  Mal-Mir-194-P4a  Mal-Mir-194-P4b  Mml-Mir-194-P4  Mmr-Mir-194-P4  Mmu-Mir-194-P4  Mun-Mir-194-P4  Neu-Mir-194-P4  Oan-Mir-194-P4  Ocu-Mir-194-P4  Pab-Mir-194-P4  Pbv-Mir-194-P4  Rno-Mir-194-P4  Sha-Mir-194-P4  Spt-Mir-194-P4  Sto-Mir-194-P4  Tni-Mir-194-P4a  Tni-Mir-194-P4b  Xla-Mir-194-P4c  Xla-Mir-194-P4d  Xtr-Mir-194-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017714301.1: 24491-24548 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-194-P4)		 Mir-192-P4 NW_017714301.1: 23381-23442 [-] UCSC
Mir-194-P4 NW_017714301.1: 24491-24548 [-] UCSC
Seed GUAACAG
Precursor
(pre-Mir +30nt flank)		 
AUUGGGGCCUCAGCGCUGGUGUCCAUCCGCUGUAACAGCAACUCCAUGUGGGAGGGGUCCGUGGUCCCCGUGGGGCUGCUGUUAUUCUGGACGGGCACCGGGAGCGACGGACAGAUGG
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Structure
        10          20        30        40        50         
AUUGGGGCCUCAGCGCU--|      A    CU         A       U    GGGGU 
                   GGUGUCC UCCG  GUAACAGCA CUCCAUG GGGA     \
                   CCACGGG AGGU  UAUUGUCGU GGGGUGC CCCU     C
GGUAGACAGGCAGCGAGGG^      C    CU         C       -    GGUGC 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ami-Mir-194-P4_5p
mirBase accessionMIMAT0038212
Sequence 
0- UGUAACAGCAACUCCAUGUGGGA -23
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Star sequence

Ami-Mir-194-P4_3p*
mirBase accessionMIMAT0038214
Sequence 
36- CCCGUGGGGCUGCUGUUAUUCU -58
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