MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-194-P4

Family name MIR-194 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-194-P4  Ami-Mir-194-P4  Bta-Mir-194-P4  Cfa-Mir-194-P4  Cja-Mir-194-P4  Cpi-Mir-194-P4  Cpo-Mir-194-P4  Dno-Mir-194-P4  Dre-Mir-194-P4a  Dre-Mir-194-P4b  Eca-Mir-194-P4  Ete-Mir-194-P4  Gja-Mir-194-P4  Gmo-Mir-194-P4a  Gmo-Mir-194-P4b  Hsa-Mir-194-P4  Lch-Mir-194-P4  Mal-Mir-194-P4a  Mal-Mir-194-P4b  Mml-Mir-194-P4  Mmr-Mir-194-P4  Mmu-Mir-194-P4  Mun-Mir-194-P4  Neu-Mir-194-P4  Oan-Mir-194-P4  Ocu-Mir-194-P4  Pab-Mir-194-P4  Pbv-Mir-194-P4  Rno-Mir-194-P4  Sha-Mir-194-P4  Spt-Mir-194-P4  Sto-Mir-194-P4  Tni-Mir-194-P4a  Tni-Mir-194-P4b  Xla-Mir-194-P4c  Xla-Mir-194-P4d  Xtr-Mir-194-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG28: 158250-158305 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P4)		 Mir-194-P4 LG28: 158250-158305 [+] Ensembl
Mir-192-P4 LG28: 158411-158472 [+] Ensembl
Seed GUAACAG
Precursor
(pre-Mir +30nt flank)		 
CGCAGCCCUGCUCGACUGGCACUCGCUGGCUGUAACAGCAACUCCAUGUGGAAGAGCUGUGGUUCCAGUGGAGCUGCUGUUACCUGCAGAGAGGAGCCCCUGUGCAGCAGACCGCA
Get precursor sequence
Structure
        10         20         30         40        50        
CGCAGCCCUGCUCGACU-   A-|  G   G U-         A      G     GAGC 
                  GGC  CUC CUG C  GUAACAGCA CUCCAU UGGAA    \
                  CCG  GAG GAC G  CAUUGUCGU GAGGUG ACCUU    U
ACGCCAGACGACGUGUCC   AG^  A   - UC         C      -     GGUG 
    110       100        90         80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-194-P4_5p
mirBase accessionNone
Sequence 
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
Star sequence

Loc-Mir-194-P4_3p*
mirBase accessionNone
Sequence 
34- CCAGUGGAGCUGCUGUUACCUG -56
Get sequence