MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-194-P4

Family name MIR-194 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-194-P2 
Orthologues Aca-Mir-194-P4  Ami-Mir-194-P4  Bta-Mir-194-P4  Cfa-Mir-194-P4  Cpi-Mir-194-P4  Cpo-Mir-194-P4  Dno-Mir-194-P4  Dre-Mir-194-P4a  Dre-Mir-194-P4b  Eca-Mir-194-P4  Ete-Mir-194-P4  Gja-Mir-194-P4  Gmo-Mir-194-P4a  Gmo-Mir-194-P4b  Hsa-Mir-194-P4  Lch-Mir-194-P4  Loc-Mir-194-P4  Mal-Mir-194-P4a  Mal-Mir-194-P4b  Mml-Mir-194-P4  Mmr-Mir-194-P4  Mmu-Mir-194-P4  Mun-Mir-194-P4  Neu-Mir-194-P4  Oan-Mir-194-P4  Ocu-Mir-194-P4  Pab-Mir-194-P4  Pbv-Mir-194-P4  Rno-Mir-194-P4  Sha-Mir-194-P4  Spt-Mir-194-P4  Sto-Mir-194-P4  Tni-Mir-194-P4a  Tni-Mir-194-P4b  Xla-Mir-194-P4c  Xla-Mir-194-P4d  Xtr-Mir-194-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021925.1: 118727525-118727582 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P4)		 Mir-192-P4 CM021925.1: 118727318-118727382 [-] UCSC Ensembl
Mir-194-P4 CM021925.1: 118727525-118727582 [-] UCSC Ensembl
Seed GUAACAG
Precursor
(pre-Mir +30nt flank)		 
GGGCCGGGCCUCCAGUUGGCUCCCACCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACCGAUUCCAGUGGGGCUGCUGUUAUCUGGGGCGAGGGCUGGUACUCACGAAGGAGAGG
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Structure
        10          20        30        40        50         
GGGCCGGGCCUCCAGUU--|    CCA    CU         A      G     GUGCC 
                   GGCUC   CCCC  GUAACAGCA CUCCAU UGGAA     \
                   UCGGG   GGGG  UAUUGUCGU GGGGUG ACCUU     C
GGAGAGGAAGCACUCAUGG^    AGC    UC         C      -     AGCCA 
      110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
- +
To
Mature sequence

Cja-Mir-194-P4_5p
mirBase accessionNone
Sequence 
0- UGUAACAGCAACUCCAUGUGGAA -23
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Star sequence

Cja-Mir-194-P4_3p* (predicted)
mirBase accessionNone
Sequence 
36- CCAGUGGGGCUGCUGUUAUCUG -58
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