MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-194-P4a

Family name MIR-194 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-194b
Paralogues Gmo-Mir-194-P4b 
Orthologues Aca-Mir-194-P4  Ami-Mir-194-P4  Bta-Mir-194-P4  Cfa-Mir-194-P4  Cja-Mir-194-P4  Cpi-Mir-194-P4  Cpo-Mir-194-P4  Dno-Mir-194-P4  Dre-Mir-194-P4a  Eca-Mir-194-P4  Ete-Mir-194-P4  Gja-Mir-194-P4  Hsa-Mir-194-P4  Lch-Mir-194-P4  Loc-Mir-194-P4  Mal-Mir-194-P4a  Mml-Mir-194-P4  Mmr-Mir-194-P4  Mmu-Mir-194-P4  Mun-Mir-194-P4  Neu-Mir-194-P4  Oan-Mir-194-P4  Ocu-Mir-194-P4  Pab-Mir-194-P4  Pbv-Mir-194-P4  Rno-Mir-194-P4  Sha-Mir-194-P4  Spt-Mir-194-P4  Sto-Mir-194-P4  Tni-Mir-194-P4a  Xtr-Mir-194-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_3610: 119729-119786 [+] UCSC Ensembl
Seed GUAACAG
Precursor
(pre-Mir +30nt flank)		 
UGCUGCAGCUGGAGUGUGGGUCUCACCAGCUGUAACAGCAUCUCCAUAUGGAUGAGUGUCUGGUGUCCAGUGGAGCUGCUGUUAUCUGUGGAGGGACGCCCGCGGUCAUCCACAGCCG
Get precursor sequence
Structure
        10          20        30        40        50         
UGCUGCAGCUGGAGUGU-  -|    A   GCU         U      A     GAGUG 
                  GG GUCUC CCA   GUAACAGCA CUCCAU UGGAU     \
                  CC CAGGG GGU   UAUUGUCGU GAGGUG ACCUG     U
GCCGACACCUACUGGCGC  G^    A   GUC         C      -     UGGUC 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-194-P4a_5p
mirBase accessionMIMAT0044233
Sequence 
0- UGUAACAGCAUCUCCAUAUGGAU -23
Get sequence
Star sequence

Gmo-Mir-194-P4a_3p*
mirBase accessionNone
Sequence 
36- CCAGUGGAGCUGCUGUUAUCUG -58
Get sequence