| MirGeneDB ID | Spt-Mir-194-P4 |
|---|---|
| Family name | MIR-194 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-194-P2 |
| Orthologues | Aca-Mir-194-P4 Ami-Mir-194-P4 Bta-Mir-194-P4 Cfa-Mir-194-P4 Cja-Mir-194-P4 Cpi-Mir-194-P4 Cpo-Mir-194-P4 Dno-Mir-194-P4 Dre-Mir-194-P4a Dre-Mir-194-P4b Eca-Mir-194-P4 Ete-Mir-194-P4 Gja-Mir-194-P4 Gmo-Mir-194-P4a Gmo-Mir-194-P4b Hsa-Mir-194-P4 Lch-Mir-194-P4 Loc-Mir-194-P4 Mal-Mir-194-P4a Mal-Mir-194-P4b Mml-Mir-194-P4 Mmr-Mir-194-P4 Mmu-Mir-194-P4 Mun-Mir-194-P4 Neu-Mir-194-P4 Oan-Mir-194-P4 Ocu-Mir-194-P4 Pab-Mir-194-P4 Pbv-Mir-194-P4 Rno-Mir-194-P4 Sha-Mir-194-P4 Sto-Mir-194-P4 Tni-Mir-194-P4a Tni-Mir-194-P4b Xla-Mir-194-P4c Xla-Mir-194-P4d Xtr-Mir-194-P4 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01015260.1: 384821-384880 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-194-P4) |
Mir-194-P4
QEPC01015260.1: 384821-384880 [+]
UCSC
Ensembl
Mir-192-P4 QEPC01015260.1: 385969-386032 [+] UCSC Ensembl |
| Seed | GUAACAG |
| Precursor (pre-Mir +30nt flank) |
GAUGUUUGCACAACUGGGGUGCUUAUCUGCUGUAACAGCAACUCCAUGUGGAAGUCUCUGGCCUGGUUCCAGUGGGGCGGCUGUUAUUUUGGAUGGGCACUCGGGAGCAUCAGAUGGGGCGet precursor sequence |
| Structure | 10 20 30 40 50 GAUGUUUGCACAACUGG--| CU AA G GUCUCU GGUGCUUAUCUG GUAACAGC CUCCAU UGGAA \ UCACGGGUAGGU UAUUGUCG GGGGUG ACCUU G CGGGGUAGACUACGAGGGC^ UU GC - GGUCCG . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-194-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
|
| Star sequence | Spt-Mir-194-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- CCAGUGGGGCGGCUGUUAUUUU -60
Get sequence
|
