MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-194-P4b

Family name MIR-194 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-194a
Paralogues Dre-Mir-194-P4a 
Orthologues Aca-Mir-194-P4  Ami-Mir-194-P4  Bta-Mir-194-P4  Cfa-Mir-194-P4  Cja-Mir-194-P4  Cpi-Mir-194-P4  Cpo-Mir-194-P4  Dno-Mir-194-P4  Eca-Mir-194-P4  Ete-Mir-194-P4  Gja-Mir-194-P4  Gmo-Mir-194-P4b  Hsa-Mir-194-P4  Lch-Mir-194-P4  Loc-Mir-194-P4  Mal-Mir-194-P4b  Mml-Mir-194-P4  Mmr-Mir-194-P4  Mmu-Mir-194-P4  Mun-Mir-194-P4  Neu-Mir-194-P4  Oan-Mir-194-P4  Ocu-Mir-194-P4  Pab-Mir-194-P4  Pbv-Mir-194-P4  Rno-Mir-194-P4  Sha-Mir-194-P4  Spt-Mir-194-P4  Sto-Mir-194-P4  Tni-Mir-194-P4b  Xtr-Mir-194-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr10: 27063188-27063244 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P4b)		 Mir-194-P4b chr10: 27063188-27063244 [+] UCSC Ensembl
Mir-192-P4b chr10: 27063369-27063431 [+] UCSC Ensembl
Seed GUAACAG
Precursor
(pre-Mir +30nt flank)		 
UCCAUCUGCAAAGACUUGGUGCUGACUGCUUGUAACAGCAACUCCAUGUGGAAGGUUUGUGUCUUCCAGUGGAGCUGCUGUUGCGUGCAGAUAGUCACCAUUAUCUGCUUUAUGCAU
Get precursor sequence
Structure
        10         20         30        40        50        
UCCAUCUGCAAAGACUU-    -|  A    U          A      G     GGUU 
                  GGUG CUG CUGC UGUAACAGCA CUCCAU UGGAA    U
                  CCAC GAU GACG GCGUUGUCGU GAGGUG ACCUU    G
UACGUAUUUCGUCUAUUA    U^  A    U          C      -     CUGU 
     110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-194-P4b_5p
mirBase accessionMIMAT0001858
Sequence 
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
Proposed targets TargetScanFish: dre-miR-194a
Star sequence

Dre-Mir-194-P4b_3p*
mirBase accessionNone
Sequence 
35- CCAGUGGAGCUGCUGUUGCGUG -57
Get sequence