MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-192-P4

Family name MIR-192 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Ami-Mir-192-P4  Bta-Mir-192-P4  Cfa-Mir-192-P4  Cja-Mir-192-P4  Cpi-Mir-192-P4  Cpo-Mir-192-P4  Dno-Mir-192-P4  Dre-Mir-192-P4b  Eca-Mir-192-P4  Ete-Mir-192-P4  Gja-Mir-192-P4  Gmo-Mir-192-P4b  Hsa-Mir-192-P4  Mal-Mir-192-P4b  Mml-Mir-192-P4  Mmr-Mir-192-P4  Mmu-Mir-192-P4  Mun-Mir-192-P4  Neu-Mir-192-P4  Oan-Mir-192-P4  Ocu-Mir-192-P4  Pab-Mir-192-P4  Rno-Mir-192-P4  Sha-Mir-192-P4  Spt-Mir-192-P4  Tni-Mir-192-P4b-v1  Xla-Mir-192-P4c  Xla-Mir-192-P4d  Xtr-Mir-192-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG28: 158411-158472 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-192-P4)		 Mir-194-P4 LG28: 158250-158305 [+] Ensembl
Mir-192-P4 LG28: 158411-158472 [+] Ensembl
Seed UGACCUA
Precursor
(pre-Mir +30nt flank)		 
ACGAGCCCGCAGGGCCAGGGGCGCAGGACGAUGACCUAUGAAUUGACAGCCAGUGUUGUAUGGCGCCUGCCUGUCAGUUCUAUAGGCCACAGGCCUGCGGCCUCACUCCUGGACGCUCGGAC
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Structure
        10         20         30         40        50          
ACGAGCCCGCAGGGCCA-    -      ACGA  A     -|         C  GUGUUGU 
                  GGGG CGCAGG    UG CCUAU GAAUUGACAG CA       \
                  CUCC GCGUCC    AC GGAUA CUUGACUGUC GU       A
CAGGCUCGCAGGUCCUCA    G      GGAC  C     U^         C  CCGCGGU 
120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU Yes
MotifsUGUG in loop
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-192-P4_5p
mirBase accessionNone
Sequence 
0- AUGACCUAUGAAUUGACAGCCA -22
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Star sequence

Loc-Mir-192-P4_3p*
mirBase accessionNone
Sequence 
39- CCUGUCAGUUCUAUAGGCCACAG -62
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