MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-192-P4

Family name MIR-192 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-192
Paralogues Ami-Mir-192-P2 
Orthologues Bta-Mir-192-P4  Cfa-Mir-192-P4  Cja-Mir-192-P4  Cpi-Mir-192-P4  Cpo-Mir-192-P4  Dno-Mir-192-P4  Dre-Mir-192-P4b  Eca-Mir-192-P4  Ete-Mir-192-P4  Gja-Mir-192-P4  Gmo-Mir-192-P4b  Hsa-Mir-192-P4  Loc-Mir-192-P4  Mal-Mir-192-P4b  Mml-Mir-192-P4  Mmr-Mir-192-P4  Mmu-Mir-192-P4  Mun-Mir-192-P4  Neu-Mir-192-P4  Oan-Mir-192-P4  Ocu-Mir-192-P4  Pab-Mir-192-P4  Rno-Mir-192-P4  Sha-Mir-192-P4  Spt-Mir-192-P4  Tni-Mir-192-P4b-v1  Xla-Mir-192-P4c  Xla-Mir-192-P4d  Xtr-Mir-192-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017714301.1: 23381-23442 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-192-P4)		 Mir-192-P4 NW_017714301.1: 23381-23442 [-] UCSC
Mir-194-P4 NW_017714301.1: 24491-24548 [-] UCSC
Seed GACCUAU
Precursor
(pre-Mir +30nt flank)		 
CCAGCCCCCCAGAUUGCGUGCAUGGGGCUAUGACCUAUGGAUUGACAGCCAGUAUCGGAGCCUCGCCCUGGCUGUCUGUUCUAUAGGGCAUAGGACUGGGCGCACCCGUGGCGGGGGGCAGG
Get precursor sequence
Structure
        10          20        30        40         50          
CCAGCCCCCCAGAUUGC--    AU  GG     A        UU-|        UAUCGGA 
                   GUGC  GG  CUAUG CCUAUGGA   GACAGCCAG       \
                   CGCG  UC  GAUAC GGAUAUCU   CUGUCGGUC       G
GGACGGGGGGCGGUGCCCA    GG  AG     G        UGU^        CCGCUCC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThe Drosha cut is +1 relative to most other vertebrates examined. There is also a second Dicer cut read -3 on the 3p arm but without corresponding 5p reads.
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Ami-Mir-192-P4_5p
mirBase accessionMIMAT0038206
Sequence 
0- UGACCUAUGGAUUGACAGCCAGU -23
Get sequence
Star sequence

Ami-Mir-192-P4_3p*
mirBase accessionMIMAT0038207
Sequence 
38- UGGCUGUCUGUUCUAUAGGGCAUA -62
Get sequence