MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-192-P4

Family name MIR-192 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Ami-Mir-192-P4  Bta-Mir-192-P4  Cfa-Mir-192-P4  Cja-Mir-192-P4  Cpi-Mir-192-P4  Cpo-Mir-192-P4  Dno-Mir-192-P4  Dre-Mir-192-P4b  Eca-Mir-192-P4  Ete-Mir-192-P4  Gja-Mir-192-P4  Gmo-Mir-192-P4b  Hsa-Mir-192-P4  Loc-Mir-192-P4  Mal-Mir-192-P4b  Mml-Mir-192-P4  Mmr-Mir-192-P4  Mmu-Mir-192-P4  Mun-Mir-192-P4  Neu-Mir-192-P4  Oan-Mir-192-P4  Ocu-Mir-192-P4  Pab-Mir-192-P4  Rno-Mir-192-P4  Spt-Mir-192-P4  Tni-Mir-192-P4b-v1  Xla-Mir-192-P4c  Xla-Mir-192-P4d  Xtr-Mir-192-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 AFEY01099922_Mir-192-P1_Mir-194-P1: 2253-2316 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-192-P4)		 Mir-192-P4 AFEY01099922_Mir-192-P1_Mir-194-P1: 2253-2316 [-] UCSC Ensembl
Mir-194-P4 AFEY01099922_Mir-192-P1_Mir-194-P1: 2424-2481 [-] UCSC Ensembl
Seed UGACCUA
Precursor
(pre-Mir +30nt flank)		 
CGCCCCUCCCCCCUCAGAGUGCGCAGGGCUCUGACCUAUGAAUUGACAGCCAGUCCUCAGUCUCCCUUCUGGCUGCCAAUUCCAUAGGUCACAGGUAUGUUCGCCUCAAUACCCGCGUGGAUGA
Get precursor sequence
Structure
        10          20        30          40        50        60 
CGCCCCUCCCCCCUCAGA--   C   GG   C-        -|     A     AGUCCUCAG 
                    GUG GCA  GCU  UGACCUAU GAAUUG CAGCC         \
                    CGC UGU  UGG  ACUGGAUA CUUAAC GUCGG         U
AGUAGGUGCGCCCAUAACUC   U   A-   AC        C^     C     UCUUCCCUC 
  120       110       100         90        80        70
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU Yes
MotifsNo
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-192-P4_5p
mirBase accessionNone
Sequence 
0- CUGACCUAUGAAUUGACAGCC -21
Get sequence
Star sequence

Sha-Mir-192-P4_3p*
mirBase accessionNone
Sequence 
42- CUGCCAAUUCCAUAGGUCACAG -64
Get sequence