Mir-192-P4

MirGeneDB ID

Cpi-Mir-192-P4

Family name

MIR-192 (all species)

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-192

Paralogues

Cpi-Mir-192-P2

Orthologues

Ami-Mir-192-P4 Bta-Mir-192-P4 Cfa-Mir-192-P4 Cja-Mir-192-P4 Cpo-Mir-192-P4 Dno-Mir-192-P4 Dre-Mir-192-P4b Eca-Mir-192-P4 Ete-Mir-192-P4 Gja-Mir-192-P4 Gmo-Mir-192-P4b Hsa-Mir-192-P4 Loc-Mir-192-P4 Mal-Mir-192-P4b Mml-Mir-192-P4 Mmr-Mir-192-P4 Mmu-Mir-192-P4 Mun-Mir-192-P4 Neu-Mir-192-P4 Oan-Mir-192-P4 Ocu-Mir-192-P4 Pab-Mir-192-P4 Rno-Mir-192-P4 Sha-Mir-192-P4 Spt-Mir-192-P4 Tni-Mir-192-P4b-v1 Xla-Mir-192-P4c Xla-Mir-192-P4d Xtr-Mir-192-P4

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(chrPic1)

JH584847: 983412-983475 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-192-P4)

Mir-194-P4 JH584847: 982519-982578 [+] UCSC Ensembl
Mir-192-P4 JH584847: 983412-983475 [+] UCSC Ensembl

Seed

UGACCUA

Precursor
(pre-Mir +30nt flank)

GCAGCCCCCCAAGACCCAGUGCACAGGACUAUGACCUAUGAAUUGACAGCCAGUCCUUCUGCCGCGCCCUGGCUGUCAGUUCUGUAGGGCACAGGUAUGUUCACCUCCAUGACCUCGGCAUGGC

Get precursor sequence

Structure

        10          20        30         40        50        60 
GCAGCCCCCCAAGACCCA--   C   GGA  A  A     -|           AGUCCUUCU 
                    GUG ACA   CU UG CCUAU GAAUUGACAGCC         \
                    CAC UGU   GA AC GGAUG CUUGACUGUCGG         G
CGGUACGGCUCCAGUACCUC   U   AUG  C  G     U^           UCCCGCGCC 
  120       110       100        90        80        70