MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-194-P2

Family name MIR-194 (all species)
Seed GUAACAG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-194-2
Paralogues Ami-Mir-194-P1 
Orthologues Aca-Mir-194-P2  Bta-Mir-194-P2  Cfa-Mir-194-P2  Cpi-Mir-194-P2  Cpo-Mir-194-P2  Dno-Mir-194-P2  Dre-Mir-194-P2a  Dre-Mir-194-P2b  Ete-Mir-194-P2  Gja-Mir-194-P2  Gmo-Mir-194-P2a  Gmo-Mir-194-P2b  Hsa-Mir-194-P2  Lch-Mir-194-P2  Loc-Mir-194-P2  Mal-Mir-194-P2a  Mal-Mir-194-P2b  Mml-Mir-194-P2  Mmu-Mir-194-P2  Mun-Mir-194-P2  Oan-Mir-194-P2  Ocu-Mir-194-P2  Pbv-Mir-194-P2  Rno-Mir-194-P2  Sha-Mir-194-P2  Spt-Mir-194-P2  Sto-Mir-194-P2  Tni-Mir-194-P2a  Tni-Mir-194-P2b  Xla-Mir-194-P2c  Xla-Mir-194-P2d  Xtr-Mir-194-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017714301.1: 24491-24548 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-194-P2)
Mir-192-P2 NW_017714301.1: 23381-23442 [-] UCSC
Mir-194-P2 NW_017714301.1: 24491-24548 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AUUGGGGCCUCAGCGCUGGUGUCCAUCCGCUGUAACAGCAACUCCAUGUGGGAGGGGUCCGUGGUCCCCGUGGGGCUGCUGUUAUUCUGGACGGGCACCGGGAGCGACGGACAGAUGG
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Structure
        10          20        30        40        50         
AUUGGGGCCUCAGCGCU--|      A    CU         A       U    GGGGU 
                   GGUGUCC UCCG  GUAACAGCA CUCCAUG GGGA     \
                   CCACGGG AGGU  UAUUGUCGU GGGGUGC CCCU     C
GGUAGACAGGCAGCGAGGG^      C    CU         C       -    GGUGC 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-194-P2_5p

mirBase accessionMIMAT0038212
Sequence
0- UGUAACAGCAACUCCAUGUGGGA -23
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Star sequence

Ami-Mir-194-P2_3p*

mirBase accessionMIMAT0038214
Sequence
36- CCCGUGGGGCUGCUGUUAUUCU -58
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