MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-194-P2

Family name MIR-194 (all species)
Seed GUAACAG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-194-2
Paralogues Rno-Mir-194-P1 
Orthologues Aca-Mir-194-P2  Ami-Mir-194-P2  Bta-Mir-194-P2  Cfa-Mir-194-P2  Cpi-Mir-194-P2  Cpo-Mir-194-P2  Dno-Mir-194-P2  Dre-Mir-194-P2a  Dre-Mir-194-P2b  Ete-Mir-194-P2  Gja-Mir-194-P2  Gmo-Mir-194-P2a  Gmo-Mir-194-P2b  Hsa-Mir-194-P2  Lch-Mir-194-P2  Loc-Mir-194-P2  Mal-Mir-194-P2a  Mal-Mir-194-P2b  Mml-Mir-194-P2  Mmu-Mir-194-P2  Mun-Mir-194-P2  Oan-Mir-194-P2  Ocu-Mir-194-P2  Pbv-Mir-194-P2  Sha-Mir-194-P2  Spt-Mir-194-P2  Sto-Mir-194-P2  Tni-Mir-194-P2a  Tni-Mir-194-P2b  Xla-Mir-194-P2c  Xla-Mir-194-P2d  Xtr-Mir-194-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr1: 221634800-221634857 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P2)
Mir-194-P2 chr1: 221634800-221634857 [+] UCSC Ensembl
Mir-192-P2 chr1: 221634994-221635058 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGCUCUGACCCCCAUGGCUCCCACCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGAUUCCAGUGGGGCUGCUGUUAUCUGGGGUGGAGGCUGGUGCCUGCAGAGGAGGAG
Get precursor sequence
Structure
        10          20        30        40        50         
UGUGCUCUGACCCCCAU--|  UC       CU         A      G     GUGCC 
                   GGC  CCACCCC  GUAACAGCA CUCCAU UGGAA     \
                   UCG  GGUGGGG  UAUUGUCGU GGGGUG ACCUU     C
GAGGAGGAGACGUCCGUGG^  GA       UC         C      -     AGUCA 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
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Mature sequence

Rno-Mir-194-P2_5p

mirBase accessionMIMAT0000869
Sequence
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
Proposed targets microrna.org: MIMAT0000869
TargetScanVert: rno-miR-194-5p
miRDB: MIMAT0000869
Star sequence

Rno-Mir-194-P2_3p*

mirBase accessionMIMAT0017148
Sequence
36- CCAGUGGGGCUGCUGUUAUCUG -58
Get sequence
Proposed targets TargetScanVert: rno-miR-194-3p
miRDB: MIMAT0017148