MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-194-P2

Family name MIR-194 (all species)
Seed GUAACAG
Species Dog (Canis familiaris)
MiRBase ID
Paralogues Cfa-Mir-194-P1 
Orthologues Aca-Mir-194-P2  Ami-Mir-194-P2  Bta-Mir-194-P2  Cpi-Mir-194-P2  Cpo-Mir-194-P2  Dno-Mir-194-P2  Dre-Mir-194-P2a  Dre-Mir-194-P2b  Ete-Mir-194-P2  Gja-Mir-194-P2  Gmo-Mir-194-P2a  Gmo-Mir-194-P2b  Hsa-Mir-194-P2  Lch-Mir-194-P2  Loc-Mir-194-P2  Mal-Mir-194-P2a  Mal-Mir-194-P2b  Mml-Mir-194-P2  Mmu-Mir-194-P2  Mun-Mir-194-P2  Oan-Mir-194-P2  Ocu-Mir-194-P2  Pbv-Mir-194-P2  Rno-Mir-194-P2  Sha-Mir-194-P2  Spt-Mir-194-P2  Sto-Mir-194-P2  Tni-Mir-194-P2a  Tni-Mir-194-P2b  Xla-Mir-194-P2c  Xla-Mir-194-P2d  Xtr-Mir-194-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)
chr18: 52280929-52280986 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCCAGGCCUCCAGUUGGUUCCUACCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGGUUCCAGUGGGGCUGCUGUUAUCGGGGAUGGGGACCUGUACCCACGGAGGAGGAG
Get precursor sequence
Structure
        10          20        30        40        50         
GGGCCAGGCCUCCAGUU--|       C    U         A      G     GUGCC 
                   GGUUCCUA CCCC GUAACAGCA CUCCAU UGGAA     \
                   CCAGGGGU GGGG UAUUGUCGU GGGGUG ACCUU     C
GAGGAGGAGGCACCCAUGU^       A    C         C      -     GGUCA 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-194-P2_5p

mirBase accessionNone
Sequence
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
Star sequence

Cfa-Mir-194-P2_3p*

mirBase accessionNone
Sequence
36- CCAGUGGGGCUGCUGUUAUCGG -58
Get sequence