MirGeneDB ID | Cfa-Mir-194-P2 |
Family name |
MIR-194 (all species) |
Seed |
GUAACAG |
Species |
Dog (Canis familiaris) |
MiRBase ID |
|
Paralogues |
Cfa-Mir-194-P1
|
Orthologues |
Aca-Mir-194-P2
Ami-Mir-194-P2
Bta-Mir-194-P2
Cpi-Mir-194-P2
Cpo-Mir-194-P2
Dno-Mir-194-P2
Dre-Mir-194-P2a
Dre-Mir-194-P2b
Ete-Mir-194-P2
Gja-Mir-194-P2
Gmo-Mir-194-P2a
Gmo-Mir-194-P2b
Hsa-Mir-194-P2
Lch-Mir-194-P2
Loc-Mir-194-P2
Mal-Mir-194-P2a
Mal-Mir-194-P2b
Mml-Mir-194-P2
Mmu-Mir-194-P2
Mun-Mir-194-P2
Oan-Mir-194-P2
Ocu-Mir-194-P2
Pbv-Mir-194-P2
Rno-Mir-194-P2
Sha-Mir-194-P2
Spt-Mir-194-P2
Sto-Mir-194-P2
Tni-Mir-194-P2a
Tni-Mir-194-P2b
Xla-Mir-194-P2c
Xla-Mir-194-P2d
Xtr-Mir-194-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (canFam3_add) |
chr18: 52280929-52280986 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGCCAGGCCUCCAGUUGGUUCCUACCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGGUUCCAGUGGGGCUGCUGUUAUCGGGGAUGGGGACCUGUACCCACGGAGGAGGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGCCAGGCCUCCAGUU--| C U A G GUGCC
GGUUCCUA CCCC GUAACAGCA CUCCAU UGGAA \
CCAGGGGU GGGG UAUUGUCGU GGGGUG ACCUU C
GAGGAGGAGGCACCCAUGU^ A C C - GGUCA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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Mature sequence |
Cfa-Mir-194-P2_5p |
mirBase accession | None |
Sequence |
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
|
Star sequence |
Cfa-Mir-194-P2_3p* |
mirBase accession | None |
Sequence |
36- CCAGUGGGGCUGCUGUUAUCGG -58
Get sequence
|