Mir-194-P2

MirGeneDB ID

Cpi-Mir-194-P2

Family name

MIR-194 (all species)

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-194-1

Paralogues

Cpi-Mir-194-P4

Orthologues

Aca-Mir-194-P2 Ami-Mir-194-P2 Bta-Mir-194-P2 Cfa-Mir-194-P2 Cja-Mir-194-P2 Cli-Mir-194-P2 Cmi-Mir-194-P2 Eca-Mir-194-P2 Ete-Mir-194-P2 Gga-Mir-194-P2 Gja-Mir-194-P2 Hsa-Mir-194-P2 Laf-Mir-194-P2 Lch-Mir-194-P2 Mml-Mir-194-P2 Mmr-Mir-194-P2 Mmu-Mir-194-P2 Mun-Mir-194-P2 Oan-Mir-194-P2 Ocu-Mir-194-P2 Pab-Mir-194-P2 Pbv-Mir-194-P2 Rno-Mir-194-P2 Spt-Mir-194-P2 Sto-Mir-194-P2 Tgu-Mir-194-P2 Xla-Mir-194-P2a Xla-Mir-194-P2b Xtr-Mir-194-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(chrPic1)

JH584820: 1568908-1568963 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-194-P2)

Mir-194-P2 JH584820: 1568908-1568963 [+] UCSC Ensembl
Mir-192-P2 JH584820: 1569225-1569285 [+] UCSC Ensembl

Seed

GUAACAG

Precursor
(pre-Mir +30nt flank)

CAUUCAAGACUAACCAACAGUGUUAUCAGAUGUAACAGCAACUCCAUGUGGACUACACUGACUUCCAGUGGAGAUGCUGUUACUUUUGAUAUCUACUGACAGAAUGUGAAGCAGCC

Get precursor sequence

Structure

        10         20         30        40        50        
CAUUCAAGACUAACCAA-     U-|      U         A      G    CUACA 
                  CAGUG  UAUCAGA GUAACAGCA CUCCAU UGGA     \
                  GUCAU  AUAGUUU CAUUGUCGU GAGGUG ACCU     C
CCGACGAAGUGUAAGACA     CU^      U         A      -    UCAGU 
    110       100        90        80        70         60