Mir-425

MirGeneDB ID

Xtr-Mir-425

Family name

MIR-425 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-425

Paralogues

Orthologues

Aca-Mir-425 Ami-Mir-425 Bta-Mir-425 Cfa-Mir-425 Cja-Mir-425 Cli-Mir-425 Cmi-Mir-425 Cpi-Mir-425 Cpo-Mir-425 Dno-Mir-425 Dre-Mir-425 Eca-Mir-425 Ete-Mir-425 Gga-Mir-425 Gja-Mir-425 Gmo-Mir-425 Hsa-Mir-425 Laf-Mir-425 Loc-Mir-425 Mal-Mir-425 Mdo-Mir-425 Mml-Mir-425 Mmr-Mir-425 Mmu-Mir-425 Mun-Mir-425 Neu-Mir-425 Oan-Mir-425 Ocu-Mir-425 Pab-Mir-425 Pbv-Mir-425 Rno-Mir-425 Sha-Mir-425 Spt-Mir-425 Sto-Mir-425 Tgu-Mir-425 Tni-Mir-425 Xla-Mir-425-P1 Xla-Mir-425-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Gnathostomata

Genome context
(xenTro9_add)

chr4: 126189462-126189524 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-425)

Mir-2970 chr4: 126187377-126187435 [-] UCSC Ensembl
Mir-425 chr4: 126189462-126189524 [-] UCSC Ensembl
Mir-191 chr4: 126192673-126192732 [-] UCSC Ensembl

Seed

AUGACAC

Precursor
(pre-Mir +30nt flank)

AGGCGACGCCAUGGAGAGACUUAGCCUUGGAAUGACACGAUCACUCCCGUUGAGCCGAAACUCACAGCGCCAUCGGGAAUAUCGUGUCGCUCCAAAGCUCUCUCUUCGACACCAGUCGAGAUA

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Structure

        10          20        30        40        50        60  
AGGCGACGCCAUGGAGA--| CUU   C     A         CAC     U  A  CGAAAC 
                   GA   AGC UUGGA UGACACGAU   UCCCG UG GC      \
                   CU   UCG AACCU GCUGUGCUA   AGGGC AC CG      U
AUAGAGCUGACCACAGCUU^ CUC   A     C         UA-     U  -  CGACAC 
 120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-425_5p

mirBase accession

MIMAT0003640

Sequence

0- AAUGACACGAUCACUCCCGUUGAGC -25

Get sequence

Proposed targets

TargetScanVert: xtr-miR-425-5p

Star sequence

Xtr-Mir-425_3p*

mirBase accession

None

Sequence

40- CAUCGGGAAUAUCGUGUCGCUCC -63

Get sequence