MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-425

Family name MIR-425 (all species)
Seed AUGACAC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-425
Paralogues
Orthologues Aca-Mir-425  Ami-Mir-425  Bta-Mir-425  Cfa-Mir-425  Cli-Mir-425  Cmi-Mir-425  Cpi-Mir-425  Cpo-Mir-425  Dno-Mir-425  Dre-Mir-425  Ete-Mir-425  Gga-Mir-425  Gja-Mir-425  Gmo-Mir-425  Hsa-Mir-425  Loc-Mir-425  Mal-Mir-425  Mdo-Mir-425  Mml-Mir-425  Mmu-Mir-425  Mun-Mir-425  Oan-Mir-425  Ocu-Mir-425  Pbv-Mir-425  Rno-Mir-425  Sha-Mir-425  Spt-Mir-425  Sto-Mir-425  Tgu-Mir-425  Tni-Mir-425  Xla-Mir-425-P1  Xla-Mir-425-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(xenTro9_add)		 chr4: 126189462-126189524 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-425)		 Mir-425 chr4: 126189462-126189524 [-] UCSC Ensembl
Mir-191 chr4: 126192673-126192732 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGCGACGCCAUGGAGAGACUUAGCCUUGGAAUGACACGAUCACUCCCGUUGAGCCGAAACUCACAGCGCCAUCGGGAAUAUCGUGUCGCUCCAAAGCUCUCUCUUCGACACCAGUCGAGAUA
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Structure
        10          20        30        40        50        60  
AGGCGACGCCAUGGAGA--| CUU   C     A         CAC     U  A  CGAAAC 
                   GA   AGC UUGGA UGACACGAU   UCCCG UG GC      \
                   CU   UCG AACCU GCUGUGCUA   AGGGC AC CG      U
AUAGAGCUGACCACAGCUU^ CUC   A     C         UA-     U  -  CGACAC 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-425_5p
mirBase accessionMIMAT0003640
Sequence 
0- AAUGACACGAUCACUCCCGUUGAGC -25
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Proposed targets TargetScanVert: xtr-miR-425-5p
Star sequence

Xtr-Mir-425_3p*
mirBase accessionNone
Sequence 
40- CAUCGGGAAUAUCGUGUCGCUCC -63
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