MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-425

Family name MIR-425 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-425  Ami-Mir-425  Bta-Mir-425  Cfa-Mir-425  Cja-Mir-425  Cli-Mir-425  Cmi-Mir-425  Cpi-Mir-425  Cpo-Mir-425  Dno-Mir-425  Dre-Mir-425  Eca-Mir-425  Ete-Mir-425  Gga-Mir-425  Gmo-Mir-425  Hsa-Mir-425  Laf-Mir-425  Loc-Mir-425  Mal-Mir-425  Mdo-Mir-425  Mml-Mir-425  Mmr-Mir-425  Mmu-Mir-425  Mun-Mir-425  Neu-Mir-425  Oan-Mir-425  Ocu-Mir-425  Pab-Mir-425  Pbv-Mir-425  Rno-Mir-425  Sha-Mir-425  Spt-Mir-425  Sto-Mir-425  Tgu-Mir-425  Tni-Mir-425  Xla-Mir-425-P1  Xla-Mir-425-P2  Xtr-Mir-425 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015173131.1: 772282-772343 [+]
Clustered miRNAs
(< 50kb from Mir-425)		 Mir-191 NW_015173131.1: 768711-768774 [+]
Mir-425 NW_015173131.1: 772282-772343 [+]
Mir-2970 NW_015173131.1: 774145-774203 [+]
Seed AUGACAC
Precursor
(pre-Mir +30nt flank)		 
AAUUAAAAAAGAAAAAAGAAAUUGCUUUGGAAUGACACGAUCACUCCCGCUGAGCGAGCAGCGAGACAGCCACGGGGAUGUCGUGUCUGUCCCAAGCUUUUUCAUGGAUCCUGAGGCGGGCC
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Structure
        10          20        30        40        50        60  
AAUUAAAAAAGAAAAAA--|   UU    U   AU       U  CU    C  A  GAGCAG 
                   GAAA  GCUU GGA  GACACGA CA  CCCG UG GC      \
                   CUUU  CGAA CCU  CUGUGCU GU  GGGC AC CG      C
CCGGGCGGAGUCCUAGGUA^   UU    C   GU       -  AG    -  -  ACAGAG 
120       110       100        90         80          70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Mature sequence

Gja-Mir-425_5p
mirBase accessionNone
Sequence 
0- AAUGACACGAUCACUCCCGCUGAGC -25
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Star sequence

Gja-Mir-425_3p* (predicted)
mirBase accessionNone
Sequence 
40- CACGGGGAUGUCGUGUCUGUCC -62
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