MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-425

Family name MIR-425 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-425
Paralogues
Orthologues Aca-Mir-425  Ami-Mir-425  Bta-Mir-425  Cfa-Mir-425  Cja-Mir-425  Cli-Mir-425  Cmi-Mir-425  Cpi-Mir-425  Cpo-Mir-425  Dno-Mir-425  Dre-Mir-425  Eca-Mir-425  Ete-Mir-425  Gga-Mir-425  Gja-Mir-425  Gmo-Mir-425  Hsa-Mir-425  Laf-Mir-425  Loc-Mir-425  Mal-Mir-425  Mdo-Mir-425  Mml-Mir-425  Mmr-Mir-425  Mmu-Mir-425  Mun-Mir-425  Neu-Mir-425  Oan-Mir-425  Ocu-Mir-425  Pab-Mir-425  Pbv-Mir-425  Sha-Mir-425  Spt-Mir-425  Sto-Mir-425  Tgu-Mir-425  Tni-Mir-425  Xla-Mir-425-P1  Xla-Mir-425-P2  Xtr-Mir-425 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(rn6)		 chr8: 117354831-117354893 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-425)		 Mir-191 chr8: 117354378-117354441 [+] UCSC Ensembl
Mir-425 chr8: 117354831-117354893 [+] UCSC Ensembl
Seed AUGACAC
Precursor
(pre-Mir +30nt flank)		 
ACUGAACCCACAGCAUGGAAAGUGCUUUGGAAUGACACGAUCACUCCCGUUGAGUGGGCACCCAAGAAGCCAUCGGGAAUAUCGUGUCCGCCCAGUGCUCUUUCGGCACCUCCCAAACAGGGC
Get precursor sequence
Structure
        10          20        30        40        50        60  
ACUGAACCCACAGCAUG--|    U  U    AAU        CAC     U  A  GGGCAC 
                   GAAAG GC UUGG   GACACGAU   UCCCG UG GU      \
                   CUUUC CG GACC   CUGUGCUA   AGGGC AC CG      C
CGGGACAAACCCUCCACGG^    U  U    CGC        UA-     U  -  AAGAAC 
 120       110       100        90        80          70
Deep sequencing
Go to detailed chart
CommentThere are Dicer cuts -1 and -2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-425_5p
mirBase accessionMIMAT0005314
Sequence 
0- AAUGACACGAUCACUCCCGUUGAGU -25
Get sequence
Proposed targets microrna.org: MIMAT0005314
TargetScanVert: rno-miR-425-5p
miRDB: MIMAT0005314
Star sequence

Rno-Mir-425_3p*
mirBase accessionMIMAT0017306
Sequence 
40- CAUCGGGAAUAUCGUGUCCGCCC -63
Get sequence
Proposed targets TargetScanVert: rno-miR-425-3p
miRDB: MIMAT0017306