| MirGeneDB ID | Spt-Mir-425 |
|---|---|
| Family name | MIR-425 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-425 Ami-Mir-425 Bta-Mir-425 Cfa-Mir-425 Cja-Mir-425 Cli-Mir-425 Cmi-Mir-425 Cpi-Mir-425 Cpo-Mir-425 Dno-Mir-425 Dre-Mir-425 Eca-Mir-425 Ete-Mir-425 Gga-Mir-425 Gja-Mir-425 Gmo-Mir-425 Hsa-Mir-425 Laf-Mir-425 Loc-Mir-425 Mal-Mir-425 Mdo-Mir-425 Mml-Mir-425 Mmr-Mir-425 Mmu-Mir-425 Mun-Mir-425 Neu-Mir-425 Oan-Mir-425 Ocu-Mir-425 Pab-Mir-425 Pbv-Mir-425 Rno-Mir-425 Sha-Mir-425 Sto-Mir-425 Tgu-Mir-425 Tni-Mir-425 Xla-Mir-425-P1 Xla-Mir-425-P2 Xtr-Mir-425 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Gnathostomata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01014177.1: 29597-29658 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-425) |
Mir-191
QEPC01014177.1: 26608-26670 [+]
UCSC
Ensembl
Mir-425 QEPC01014177.1: 29597-29658 [+] UCSC Ensembl Mir-2970 QEPC01014177.1: 30619-30677 [+] UCSC Ensembl |
| Seed | AUGACAC |
| Precursor (pre-Mir +30nt flank) |
UCGGAGCCGGCAGGAGAGAAACGGCUUAGGAAUGACACGAUCACUCCCGCUGAGCGAGCAGCCAGGAGCCACCGGGAAUGUCGUGUCCGCCCCAAGCUCUUUCAGUGCCACCAUGGGAUGUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCGGAGCCGGCAGGAGA--| C A AAU U C C A GAGCA GAAA GGCUU GG GACACGA CA UCCCG UG GC G CUUU UCGAA CC CUGUGCU GU AGGGC AC CG C GUGUAGGGUACCACCGUGA^ C C CGC - A C - AGGAC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-425_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AAUGACACGAUCACUCCCGCUGAGC -25
Get sequence
|
| Star sequence | Spt-Mir-425_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- CACCGGGAAUGUCGUGUCCGCCC -62
Get sequence
|
