MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-10-P1b1

Family name MIR-10 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-10a-1
Paralogues Gmo-Mir-10-P1b1-v1  Gmo-Mir-10-P1b2-v1  Gmo-Mir-10-P1c1-v1  Gmo-Mir-10-P1c2-v1  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P2c2  Gmo-Mir-10-P2d1  Gmo-Mir-10-P2d2  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Gmo-Mir-10-P3c2  Gmo-Mir-10-P3d1  Gmo-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1b-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1b-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1b-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1b-v1  Cja-Mir-10-P1b-v1  Cli-Mir-10-P1b-v1  Cmi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v1  Cpo-Mir-10-P1b-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1b-v1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1b1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1b-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1b-v1  Gga-Mir-10-P1b-v1  Gja-Mir-10-P1b-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hmi-Mir-10-P1b  Hru-Mir-10-P1  Hsa-Mir-10-P1b-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1b  Lch-Mir-10-P1b  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1b-v1  Mal-Mir-10-P1b1-v1  Mdo-Mir-10-P1b-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1b-v1  Mmr-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v1  Mom-Mir-10-P1  Mun-Mir-10-P1b-v1  Neu-Mir-10-P1b-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1b-v1  Ocu-Mir-10-P1b-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1b-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1b-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1b-v1  Rph-Mir-10-P1  Sha-Mir-10-P1b-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1b  Spu-Mir-10-P1  Sto-Mir-10-P1b-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1b-v1  Tni-Mir-10-P1b1-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1b-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1009: 374096-374156 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1b1-v2)		 Mir-10-P1b1-v1 GeneScaffold_1009: 374095-374157 [-] UCSC Ensembl
Mir-10-P1b1-v2 GeneScaffold_1009: 374096-374156 [-] UCSC Ensembl
Variant

Gmo-Mir-10-P1b1-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
UUAUCAGUGGGUCUUCCGUCGUCCAUAUAUACCCUGUAGAACCGAAUUUGUGUGAUGAAACCAGAGUCACAGAUUCGAUUCUAGGGGAGUAUAUUGUCGAUGAAAACACUUCGAUGUAUUG
Get precursor sequence
Structure
        10        20         30         40        50          
UUAUCAGUGGGUCUUCCG     C  -      -|  G     C          UGAUGAA 
                  UCGUC AU AUAUAC CCU UAGAA CGAAUUUGUG       \
                  AGUAG UG UAUAUG GGG AUCUU GCUUAGACAC       A
GUUAUGUAGCUUCACAAA     C  U      A^  G     A          UGAGACC 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 relative to what is annotated here.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-10-P1b1-v2_5p
mirBase accessionMIMAT0044088
Sequence 
0- ACCCUGUAGAACCGAAUUUGUG -22
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Star sequence

Gmo-Mir-10-P1b1-v2_3p*
mirBase accessionMIMAT0044089
Sequence 
39- CAGAUUCGAUUCUAGGGGAGUA -61
Get sequence
Variant

Gmo-Mir-10-P1b1-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
AUUAUCAGUGGGUCUUCCGUCGUCCAUAUAUACCCUGUAGAACCGAAUUUGUGUGAUGAAACCAGAGUCACAGAUUCGAUUCUAGGGGAGUAUAUUGUCGAUGAAAACACUUCGAUGUAUUGA
Get precursor sequence
Structure
        10           20        30         40        50        60 
AUUAUCAGUGGGUCUUC---|    UC  U      -   G     C         GUGAUGAA 
                    CGUCG  CA AUAUAC CCU UAGAA CGAAUUUGU        \
                    GUAGC  GU UAUAUG GGG AUCUU GCUUAGACA        A
AGUUAUGUAGCUUCACAAAA^    U-  -      A   G     A         CUGAGACC 
 120       110       100          90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-10-P1b1-v1_5p
mirBase accessionMIMAT0044088
Sequence 
0- UACCCUGUAGAACCGAAUUUGU -22
Get sequence
Star sequence

Gmo-Mir-10-P1b1-v1_3p*
mirBase accessionMIMAT0044089
Sequence 
41- AGAUUCGAUUCUAGGGGAGUAU -63
Get sequence