| MirGeneDB ID | Gja-Mir-7-P1 |
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| Family name |
MIR-7 (all species) |
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| Species |
Schlegels Japanese gecko (Gekko japonicus) |
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| MiRBase ID |
|
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| Paralogues |
Gja-Mir-7-P2
Gja-Mir-7-P4
|
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| Orthologues |
Aae-Mir-7
Aca-Mir-7-P1
Aga-Mir-7
Agr-Mir-7
Ami-Mir-7-P1
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Bta-Mir-7-P1
Cfa-Mir-7-P1
Cin-Mir-7
Cja-Mir-7-P1
Cli-Mir-7-P1
Cmi-Mir-7-P1
Cpi-Mir-7-P1
Cpo-Mir-7-P1
Cte-Mir-7
Dan-Mir-7
Dlo-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dno-Mir-7-P1
Dre-Mir-7-P1a
Dre-Mir-7-P1b
Dsi-Mir-7
Dya-Mir-7
Eba-Mir-7
Eca-Mir-7-P1
Esc-Mir-7
Ete-Mir-7-P1
Gga-Mir-7-P1
Gmo-Mir-7-P1a
Gmo-Mir-7-P1b
Gpa-Mir-7
Gsa-Mir-7
Gsp-Mir-7
Hme-Mir-7
Hmi-Mir-7
Hru-Mir-7
Hsa-Mir-7-P1
Isc-Mir-7
Laf-Mir-7-P1
Lan-Mir-7
Lch-Mir-7-P1
Lgi-Mir-7
Llo-Mir-7
Loc-Mir-7-P1
Lpo-Mir-7
Mal-Mir-7-P1a
Mdo-Mir-7-P1
Mgi-Mir-7
Mml-Mir-7-P1
Mmr-Mir-7-P1
Mmu-Mir-7-P1
Mom-Mir-7
Mun-Mir-7-P1e
Mun-Mir-7-P1f
Neu-Mir-7-P1
Npo-Mir-7
Oan-Mir-7-P1
Obi-Mir-7
Ocu-Mir-7-P1
Ofu-Mir-7
Ovu-Mir-7
Pab-Mir-7-P1
Pau-Mir-7
Pbv-Mir-7-P1
Pca-Mir-7
Pcr-Mir-7
Pdu-Mir-7
Pfl-Mir-7
Pma-Mir-7-o1
Pmi-Mir-7
Pve-Mir-7
Rno-Mir-7-P1
Rph-Mir-7
Sha-Mir-7-P1
Sko-Mir-7
Sne-Mir-7
Snu-Mir-7
Spt-Mir-7-P1
Spu-Mir-7
Sro-Mir-7
Sto-Mir-7-P1
Tca-Mir-7
Tgu-Mir-7-P1
War-Mir-7
Xbo-Mir-7
Xla-Mir-7-P1c
Xla-Mir-7-P1d
Xtr-Mir-7-P1
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(GCF_001447785.1_Gekko_japonicus) |
NW_015177032.1: 643446-643509 [-]
|
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Clustered miRNAs
(< 50kb from Mir-7-P1) |
Mir-1720
NW_015177032.1: 643257-643319 [-]
Mir-7-P1
NW_015177032.1: 643446-643509 [-]
|
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| Seed |
GGAAGAC |
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Precursor
(pre-Mir +30nt flank) |
ACCCUUGGAACUCACUUGCCUGGCUCCUUAUGGAAGACUAGUGAUUUUGUUGUUCUGUAGCUCAUCUCAUGACAACAAGUCACAGUCUGCCUUAUAGCGCCUGGCCUCUGCAUCAGGAACUACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACCCUUGGAACUCACUU--| U UC UAU- A A U CUGUAGC
GCC GGC CU GG AGACU GUGAUUU GUUGUU U
CGG CCG GA CC UCUGA CACUGAA CAACAG C
CCAUCAAGGACUACGUCUC^ U C- UAUU G - - UACUCUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Gja-Mir-7-P1_5p |
| mirBase accession | None |
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| Sequence |
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
|
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| Star sequence |
Gja-Mir-7-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- CAACAAGUCACAGUCUGCCUUA -64
Get sequence
|
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