| MirGeneDB ID | Dre-Mir-7-P1b |
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| Family name |
MIR-7 (all species) |
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| Seed |
GGAAGAC |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-7a-2
|
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| Paralogues |
Dre-Mir-7-P1a
Dre-Mir-7-P2b
Dre-Mir-7-P3
Dre-Mir-7-P4b
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| Orthologues |
Aae-Mir-7
Aca-Mir-7-P1
Ami-Mir-7-P1
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Bta-Mir-7-P1
Cfa-Mir-7-P1
Cgi-Mir-7
Cin-Mir-7
Cli-Mir-7-P1
Cmi-Mir-7-P1
Cpi-Mir-7-P1
Cpo-Mir-7-P1
Cte-Mir-7
Dan-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dno-Mir-7-P1
Dsi-Mir-7
Dya-Mir-7
Esc-Mir-7
Ete-Mir-7-P1
Gga-Mir-7-P1
Gja-Mir-7-P1
Gmo-Mir-7-P1b
Hme-Mir-7
Hsa-Mir-7-P1
Isc-Mir-7
Lan-Mir-7
Lch-Mir-7-P1
Lgi-Mir-7
Loc-Mir-7-P1
Lpo-Mir-7
Mdo-Mir-7-P1
Mml-Mir-7-P1
Mmu-Mir-7-P1
Npo-Mir-7
Oan-Mir-7-P1
Obi-Mir-7
Ocu-Mir-7-P1
Ovu-Mir-7
Pbv-Mir-7-P1
Pfl-Mir-7
Pma-Mir-7-o1
Pmi-Mir-7
Rno-Mir-7-P1
Sha-Mir-7-P1
Sko-Mir-7
Spt-Mir-7-P1
Spu-Mir-7
Sto-Mir-7-P1
Tca-Mir-7
Tgu-Mir-7-P1
Xbo-Mir-7
Xtr-Mir-7-P1
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Bilateria
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Genome context
(danRer11) |
chr7: 14450544-14450608 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGAGGCUGCUUCCACAUAUUUUGGGCAUUAUGGAAGACUAGUGAUUUUGUUGUUGUGACGUCAUCAGUACUGACAACAAGUCACAGUCUGCCUCAGUGACCAGAAUCCACUCGUCAUGCACUUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GGAGGCUGCUUCCACAU--| G AU A A U GUGACGUC
AUUUUGG CAUU GG AGACU GUGAUUU GUUGUU \
UAAGACC GUGA CC UCUGA CACUGAA CAACAG A
UUUUCACGUACUGCUCACC^ A CU G - - UCAUGACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Mir-7-P1b_5p |
| mirBase accession | MIMAT0001266 |
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| Sequence |
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
|
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| Proposed targets |
TargetScanFish: dre-miR-7a
|
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| Star sequence |
Dre-Mir-7-P1b_3p* |
| mirBase accession | None |
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| Sequence |
43- CAACAAGUCACAGUCUGCCUCA -65
Get sequence
|
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