MirGeneDB ID | Dre-Mir-7-P2b |
Family name |
MIR-7 (all species) |
Seed |
GGAAGAC |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-7b
|
Paralogues |
Dre-Mir-7-P1a
Dre-Mir-7-P1b
Dre-Mir-7-P3
Dre-Mir-7-P4b
|
Orthologues |
Aae-Mir-7
Aca-Mir-7-P2
Ami-Mir-7-P2
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Bta-Mir-7-P2
Cfa-Mir-7-P2
Cgi-Mir-7
Cin-Mir-7
Cli-Mir-7-P2
Cmi-Mir-7-P2
Cpi-Mir-7-P2
Cpo-Mir-7-P2
Cte-Mir-7
Dan-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dno-Mir-7-P2
Dsi-Mir-7
Dya-Mir-7
Esc-Mir-7
Ete-Mir-7-P2
Gja-Mir-7-P2
Hme-Mir-7
Hsa-Mir-7-P2
Isc-Mir-7
Lan-Mir-7
Lch-Mir-7-P2
Lgi-Mir-7
Loc-Mir-7-P2
Lpo-Mir-7
Mdo-Mir-7-P2
Mml-Mir-7-P2
Mmu-Mir-7-P2
Mun-Mir-7-P2
Npo-Mir-7
Oan-Mir-7-P2
Obi-Mir-7
Ocu-Mir-7-P2
Ovu-Mir-7
Pbv-Mir-7-P2
Pfl-Mir-7
Pma-Mir-7-o2
Pmi-Mir-7
Rno-Mir-7-P2
Sha-Mir-7-P2
Sko-Mir-7
Spt-Mir-7-P2
Spu-Mir-7
Sto-Mir-7-P2
Tca-Mir-7
Tgu-Mir-7-P2
Xbo-Mir-7
Xtr-Mir-7-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (danRer11) |
chr5: 55607762-55607825 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGAGGAGUGAACGCUGGCUUGCUUCUGUGUGGAAGACUUGUGAUUUUGUUGUUGUUAGUUAGAUGAAGUGACAACAAAUCACGGUCUGCCCUACAGCACAGGCCCAGCAUCAUCUGCCCCCAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAGAGGAGUGAACGCUG---| CUU U A U U GUUAGUU
GCUUG CUGUG GG AGACU GUGAUUU GUUGUU A
CGGAC GACAU CC UCUGG CACUAAA CAACAG G
CACCCCCGUCUACUACGACC^ AC- C G - - UGAAGUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Mature sequence |
Dre-Mir-7-P2b_5p |
mirBase accession | MIMAT0001265 |
Sequence |
0- UGGAAGACUUGUGAUUUUGUUGUU -24
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-7b
|
Star sequence |
Dre-Mir-7-P2b_3p* |
mirBase accession | None |
Sequence |
42- CAACAAAUCACGGUCUGCCCUA -64
Get sequence
|