MirGeneDB ID | Pma-Mir-7-o2 |
Family name |
MIR-7 (all species) |
Seed |
GGAAGAC |
Species |
Sea Lamprey (Petromyzon marinus) |
MiRBase ID |
pma-mir-7a-2
|
Paralogues |
Pma-Mir-7-o1
Pma-Mir-7-o3
Pma-Mir-7-o4
|
Orthologues |
Aae-Mir-7
Aca-Mir-7-P2
Ami-Mir-7-P2
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Bta-Mir-7-P2
Cfa-Mir-7-P2
Cgi-Mir-7
Cin-Mir-7
Cli-Mir-7-P2
Cmi-Mir-7-P2
Cpi-Mir-7-P2
Cpo-Mir-7-P2
Cte-Mir-7
Dan-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dno-Mir-7-P2
Dre-Mir-7-P2b
Dsi-Mir-7
Dya-Mir-7
Esc-Mir-7
Ete-Mir-7-P2
Gga-Mir-7-P2c
Gga-Mir-7-P2d
Gja-Mir-7-P2
Gmo-Mir-7-P2a
Hme-Mir-7
Hsa-Mir-7-P2
Isc-Mir-7
Lan-Mir-7
Lch-Mir-7-P2
Lgi-Mir-7
Loc-Mir-7-P2
Lpo-Mir-7
Mal-Mir-7-P2a
Mdo-Mir-7-P2
Mml-Mir-7-P2
Mmu-Mir-7-P2
Mun-Mir-7-P2
Npo-Mir-7
Oan-Mir-7-P2
Obi-Mir-7
Ocu-Mir-7-P2
Ovu-Mir-7
Pbv-Mir-7-P2
Pfl-Mir-7
Pmi-Mir-7
Rno-Mir-7-P2
Sha-Mir-7-P2
Sko-Mir-7
Spt-Mir-7-P2
Spu-Mir-7
Sto-Mir-7-P2
Tca-Mir-7
Tgu-Mir-7-P2
Xbo-Mir-7
Xla-Mir-7-P2e
Xla-Mir-7-P2f
Xtr-Mir-7-P2
|
Node of Origin (locus) |
P. marinus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046081.1: 7296550-7296611 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAUGCUAUUGAAGCUGGUCUGCUGCCAGGUGGAAGACUAGUGAUUUUGUUGUUGAAAUAUGAAAAUGAGCAACAAGUCACAGUCUCCCGUCUAGCACAGACUUCUGAUCAGCACACAGGAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACAUGCUAUUGAAGCUG---| C C GU A A U GAAAUA
GUCUG UGC AG GG AGACU GUGAUUU GUUGUU U
CAGAC ACG UC CC UCUGA CACUGAA CAACGA G
GAGGACACACGACUAGUCUU^ - A UG C - - GUAAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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Mature sequence |
Pma-Mir-7-o2_5p |
mirBase accession | MIMAT0019370 |
Sequence |
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
|
Star sequence |
Pma-Mir-7-o2_3p* |
mirBase accession | MIMAT0019371 |
Sequence |
40- CAACAAGUCACAGUCUCCCGUC -62
Get sequence
|