Mir-7-P2

MirGeneDB ID

Bta-Mir-7-P2

Family name

MIR-7 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-7-2

Paralogues

Bta-Mir-7-P1 Bta-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P2 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P2 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Cfa-Mir-7-P2 Cin-Mir-7 Cja-Mir-7-P2 Cli-Mir-7-P2 Cmi-Mir-7-P2 Cpi-Mir-7-P2 Cpo-Mir-7-P2 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P2 Dre-Mir-7-P2b Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P2 Esc-Mir-7 Ete-Mir-7-P2 Gga-Mir-7-P2c Gga-Mir-7-P2d Gja-Mir-7-P2 Gmo-Mir-7-P2a Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P2 Isc-Mir-7 Laf-Mir-7-P2 Lan-Mir-7 Lch-Mir-7-P2 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P2 Lpo-Mir-7 Mal-Mir-7-P2a Mdo-Mir-7-P2 Mgi-Mir-7 Mml-Mir-7-P2 Mmr-Mir-7-P2 Mmu-Mir-7-P2 Mom-Mir-7 Mun-Mir-7-P2 Neu-Mir-7-P2 Npo-Mir-7 Oan-Mir-7-P2 Obi-Mir-7 Ocu-Mir-7-P2 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P2 Pau-Mir-7 Pbv-Mir-7-P2 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o2 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P2 Rph-Mir-7 Sha-Mir-7-P2 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P2 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P2 Tca-Mir-7 Tgu-Mir-7-P2 War-Mir-7 Xbo-Mir-7 Xla-Mir-7-P2e Xla-Mir-7-P2f Xtr-Mir-7-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037335.1: 77219265-77219328 [-] UCSC Ensembl

Seed

GGAAGAC

Precursor
(pre-Mir +30nt flank)

AGAUUCAGUGGAUGUUGGUCUAGUUCUGUGUGGAAGACUAGUGAUUUUGUUGUUUUUAGAUAACUGAAUCGACAACAAAUCACAGUCUGCCAUAUGGCACAGGCCAUGCCUCUACAGGACAAAU

Get precursor sequence

Structure

        10           20        30        40        50        60  
AGAUUCAGUGGAUGUUG---|   A  U        A     A       U      UUUAGAU 
                    GUCU GU CUGUGUGG AGACU GUGAUUU GUUGUU       A
                    CGGA CA GGUAUACC UCUGA CACUAAA CAACAG       A
UAAACAGGACAUCUCCGUAC^   -  C        G     -       -      CUAAGUC 
  120       110        100        90         80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-7-P2_5p

mirBase accession

MIMAT0003843

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

Get sequence

Proposed targets

TargetScanVert: bta-miR-7

Star sequence

Bta-Mir-7-P2_3p*

mirBase accession

None

Sequence

42- CAACAAAUCACAGUCUGCCAUA -64

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