Mir-7-P2

MirGeneDB ID

Gja-Mir-7-P2

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-7-P1 Gja-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P2 Ami-Mir-7-P2 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P2 Cfa-Mir-7-P2 Cgi-Mir-7 Cin-Mir-7 Cli-Mir-7-P2 Cmi-Mir-7-P2 Cpi-Mir-7-P2 Cpo-Mir-7-P2 Cte-Mir-7 Dan-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P2 Dre-Mir-7-P2b Dsi-Mir-7 Dya-Mir-7 Esc-Mir-7 Ete-Mir-7-P2 Gga-Mir-7-P2c Gga-Mir-7-P2d Gmo-Mir-7-P2a Hme-Mir-7 Hsa-Mir-7-P2 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P2 Lgi-Mir-7 Loc-Mir-7-P2 Lpo-Mir-7 Mal-Mir-7-P2a Mdo-Mir-7-P2 Mml-Mir-7-P2 Mmu-Mir-7-P2 Mun-Mir-7-P2 Npo-Mir-7 Oan-Mir-7-P2 Obi-Mir-7 Ocu-Mir-7-P2 Ovu-Mir-7 Pbv-Mir-7-P2 Pfl-Mir-7 Pma-Mir-7-o2 Pmi-Mir-7 Rno-Mir-7-P2 Sha-Mir-7-P2 Sko-Mir-7 Spt-Mir-7-P2 Spu-Mir-7 Sto-Mir-7-P2 Tca-Mir-7 Tgu-Mir-7-P2 Xbo-Mir-7 Xla-Mir-7-P2e Xla-Mir-7-P2f Xtr-Mir-7-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015171506.1: 1192548-1192611 [+]

Precursor
(pre-Mir +30nt flank)

GAUUUCAGUGGAUGUUGGUCUAGUUCUGUGUGGAAGACUAGUGAUUUUGUUGUUUUUAGAUAACUAAAUCGACAACAAAUCGCAGUCUACCAUAUGGCACAGACCAUGCCUCUACAGGACGUUG

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Structure

        10           20        30        40        50        60  
GAUUUCAGUGGAUGUUG---|   A  U        A     A       U      UUUAGAU 
                    GUCU GU CUGUGUGG AGACU GUGAUUU GUUGUU       A
                    CAGA CA GGUAUACC UCUGA CGCUAAA CAACAG       A
GUUGCAGGACAUCUCCGUAC^   -  C        A     -       -      CUAAAUC 
  120       110        100        90         80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gja-Mir-7-P2_5p

mirBase accession

None

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

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Co-mature sequence

Gja-Mir-7-P2_3p

mirBase accession

None

Sequence

42- CAACAAAUCGCAGUCUACCAUA -64

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