Mir-7-o3

MirGeneDB ID

Pma-Mir-7-o3

Family name

MIR-7 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-7b

Paralogues

Pma-Mir-7-o1 Pma-Mir-7-o2 Pma-Mir-7-o4

Orthologues

Aae-Mir-7 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P3 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Cin-Mir-7 Cli-Mir-7-P3 Cpi-Mir-7-P3 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dre-Mir-7-P3 Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Esc-Mir-7 Gmo-Mir-7-P3 Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P3 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P3 Lpo-Mir-7 Mal-Mir-7-P3 Mgi-Mir-7 Mom-Mir-7 Mun-Mir-7-P3 Npo-Mir-7 Obi-Mir-7 Ofu-Mir-7 Ovu-Mir-7 Pau-Mir-7 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pmi-Mir-7 Pve-Mir-7 Rph-Mir-7 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P3 Spu-Mir-7 Sro-Mir-7 Tca-Mir-7 Tni-Mir-7-P3 War-Mir-7 Xbo-Mir-7 Xla-Mir-7-P3a Xla-Mir-7-P3b Xtr-Mir-7-P3

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046120.1: 7388941-7389002 [+] UCSC Ensembl

Seed

GGAAGAC

Precursor
(pre-Mir +30nt flank)

GGUGGAAAGAAGGCGGAGCUGUGGGCCAUGUGGAAGACUUGUGAUUGUGUUGUUGUAUCGCUAAAGCAGGCAACAAAUCACAGUGUUCCGCAUGGAGCGGUGCUCCUUCCAUCAGCCGCGGC

Get precursor sequence

Structure

        10            20        30        40        50        60 
GGUGGAAAGAAGGCGGA----|    GGG          G   U      G       GUAUCG 
                     GCUGU   CCAUGUGGAA ACU GUGAUU UGUUGUU      C
                     UGGCG   GGUACGCCUU UGA CACUAA ACAACGG      U
CGGCGCCGACUACCUUCCUCG^    A--          G   -      -       ACGAAA 
120       110       100          90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-7-o3_5p

mirBase accession

MIMAT0019372

Sequence

0- UGGAAGACUUGUGAUUGUGUUGUU -24

Get sequence

Star sequence

Pma-Mir-7-o3_3p* (predicted)

mirBase accession

None

Sequence

40- CAACAAAUCACAGUGUUCCGCA -62

Get sequence