MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-7-P3

Family name MIR-7 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-7-P1  Lch-Mir-7-P2  Lch-Mir-7-P4 
Orthologues Aae-Mir-7  Aga-Mir-7  Agr-Mir-7  Ami-Mir-7-P3  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Cin-Mir-7  Cli-Mir-7-P3  Cpi-Mir-7-P3  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dre-Mir-7-P3  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Esc-Mir-7  Gmo-Mir-7-P3  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Isc-Mir-7  Lan-Mir-7  Lgi-Mir-7  Llo-Mir-7  Loc-Mir-7-P3  Lpo-Mir-7  Mal-Mir-7-P3  Mgi-Mir-7  Mom-Mir-7  Mun-Mir-7-P3  Npo-Mir-7  Obi-Mir-7  Ofu-Mir-7  Ovu-Mir-7  Pau-Mir-7  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o3  Pmi-Mir-7  Pve-Mir-7  Rph-Mir-7  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spt-Mir-7-P3  Spu-Mir-7  Sro-Mir-7  Tca-Mir-7  Tni-Mir-7-P3  War-Mir-7  Xbo-Mir-7  Xla-Mir-7-P3a  Xla-Mir-7-P3b  Xtr-Mir-7-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH127154.1: 495178-495242 [+] Ensembl
Seed GGAAGAC
Precursor
(pre-Mir +30nt flank)		 
UGUUUUUCAGUUUCCUGGCUGGCGUCUAUGUGGAAGACUAGUGAUUUUGUUGUUGUGGGUAUUAAAAAACAGACAACAUGUCACAGUCUGCCUCAGAGCCCCAGCGUUCUUCUUCAAUUUACACA
Get precursor sequence
Structure
        10           20        30        40        50        60   
UGUUUUUCAGUUUCCUG---|    C U  A  U  A     A     UU       GUGGGUAU 
                    GCUGG G CU UG GG AGACU GUGAU  UGUUGUU        \
                    CGACC C GA AC CC UCUGA CACUG  ACAACAG        U
ACACAUUUAACUUCUUCUUG^    C -  G  U  G     -     U-       ACAAAAAA 
   120       110       100         90         80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Mature sequence

Lch-Mir-7-P3_5p (predicted)
mirBase accessionNone
Sequence 
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
Star sequence

Lch-Mir-7-P3_3p* (predicted)
mirBase accessionNone
Sequence 
43- CAACAUGUCACAGUCUGCCUCA -65
Get sequence