Mir-7-P3

MirGeneDB ID

Gmo-Mir-7-P3

Family name

MIR-7 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-7a-2

Paralogues

Gmo-Mir-7-P1a Gmo-Mir-7-P1b Gmo-Mir-7-P2a Gmo-Mir-7-P4a

Orthologues

Aae-Mir-7 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P3 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Cin-Mir-7 Cli-Mir-7-P3 Cpi-Mir-7-P3 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dre-Mir-7-P3 Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Esc-Mir-7 Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P3 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P3 Lpo-Mir-7 Mal-Mir-7-P3 Mgi-Mir-7 Mom-Mir-7 Mun-Mir-7-P3 Npo-Mir-7 Obi-Mir-7 Ofu-Mir-7 Ovu-Mir-7 Pau-Mir-7 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o3 Pmi-Mir-7 Pve-Mir-7 Rph-Mir-7 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P3 Spu-Mir-7 Sro-Mir-7 Tca-Mir-7 Tni-Mir-7-P3 War-Mir-7 Xbo-Mir-7 Xla-Mir-7-P3a Xla-Mir-7-P3b Xtr-Mir-7-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_2525: 808355-808415 [+] UCSC Ensembl

Seed

GGAAGAC

Precursor
(pre-Mir +30nt flank)

UGUAGGACGAGAUGAAGGUCGACUGCAGCAUGGAAGACUAGUGAUUUUGUUGUUCUGUAAAUGAACCGACAACAAGUCAUUGUCUUCCUUGCGGCUUCACGGCAAAAACAACUAGAAACGU

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Structure

        10         20         30        40        50        60 
UGUAGGACGAGAUGAAG-    ACU-| A   U       U        U      CUGUAA 
                  GUCG    GC GCA GGAAGAC AGUGAUUU GUUGUU      \
                  CGGC    CG CGU CCUUCUG UUACUGAA CAACAG      A
UGCAAAGAUCAACAAAAA    ACUU^ G   U       -        -      CCAAGU 
 .       110       100        90         80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-7-P3_5p

mirBase accession

MIMAT0044123

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

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Star sequence

Gmo-Mir-7-P3_3p*

mirBase accession

None

Sequence

39- CAACAAGUCAUUGUCUUCCUUG -61

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