MirGeneDB 2.1
MirGeneDB ID

Gmo-Mir-7-P4a

Family name MIR-7 (all species)
Seed GGAAGAC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-7c
Paralogues Gmo-Mir-7-P1a  Gmo-Mir-7-P1b  Gmo-Mir-7-P2a  Gmo-Mir-7-P3 
Orthologues Aae-Mir-7  Aca-Mir-7-P4  Ami-Mir-7-P4  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P4  Cfa-Mir-7-P4  Cgi-Mir-7  Cin-Mir-7  Cli-Mir-7-P4  Cmi-Mir-7-P4  Cpi-Mir-7-P4  Cpo-Mir-7-P4  Cte-Mir-7  Dan-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P4  Dsi-Mir-7  Dya-Mir-7  Esc-Mir-7  Ete-Mir-7-P4  Gga-Mir-7-P4  Gja-Mir-7-P4  Hme-Mir-7  Hsa-Mir-7-P4  Isc-Mir-7  Lan-Mir-7  Lch-Mir-7-P4  Lgi-Mir-7  Loc-Mir-7-P4  Loc-Mir-7-P4-as  Lpo-Mir-7  Mal-Mir-7-P4a  Mdo-Mir-7-P4  Mml-Mir-7-P4  Mmu-Mir-7-P4  Mun-Mir-7-P4  Npo-Mir-7  Obi-Mir-7  Ocu-Mir-7-P4  Ovu-Mir-7  Pbv-Mir-7-P4  Pfl-Mir-7  Pma-Mir-7-o4  Pmi-Mir-7  Rno-Mir-7-P4  Sha-Mir-7-P4  Sko-Mir-7  Spt-Mir-7-P4  Spu-Mir-7  Sto-Mir-7-P4  Tca-Mir-7  Tgu-Mir-7-P4  Xbo-Mir-7 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_3660: 851093-851153 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAUUGAUGGAACGUGCUGGUUGUUCUGAAUGGAAGACUAGUGAUUUUGUUGUGGCAUUGAUGAAAGAACAACAAGUCCCAGUCUACCUCUCGGUACAAGCAAUAGUCUGCGUUCUACCUC
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Structure
        10          20        30        40        50        60 
GGAUUGAUGGAACGUGC--| G    U    AU  A     AGU     U     GGCAUUG 
                   UG UUGU CUGA  GG AGACU   GAUUU GUUGU       \
                   AC AACA GGCU  CC UCUGA   CUGAA CAACA       A
CUCCAUCUUGCGUCUGAUA^ G    U    CU  A     CC-     -     AGAAAGU 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-7-P4a_5p
mirBase accessionMIMAT0044236
Sequence 
0- UGGAAGACUAGUGAUUUUGUUGU -23
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Star sequence

Gmo-Mir-7-P4a_3p*
mirBase accessionNone
Sequence 
39- CAACAAGUCCCAGUCUACCUCU -61
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