Mir-7-P4

MirGeneDB ID

Mun-Mir-7-P4

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-7-P1e Mun-Mir-7-P1f Mun-Mir-7-P2 Mun-Mir-7-P3

Orthologues

Aae-Mir-7 Aca-Mir-7-P4 Ami-Mir-7-P4 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P4 Cfa-Mir-7-P4 Cgi-Mir-7 Cin-Mir-7 Cli-Mir-7-P4 Cmi-Mir-7-P4 Cpi-Mir-7-P4 Cpo-Mir-7-P4 Cte-Mir-7 Dan-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P4 Dre-Mir-7-P4b Dsi-Mir-7 Dya-Mir-7 Esc-Mir-7 Ete-Mir-7-P4 Gga-Mir-7-P4 Gja-Mir-7-P4 Gmo-Mir-7-P4a Hme-Mir-7 Hsa-Mir-7-P4 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P4 Lgi-Mir-7 Loc-Mir-7-P4 Loc-Mir-7-P4-as Lpo-Mir-7 Mal-Mir-7-P4a Mdo-Mir-7-P4 Mml-Mir-7-P4 Mmu-Mir-7-P4 Npo-Mir-7 Obi-Mir-7 Ocu-Mir-7-P4 Ovu-Mir-7 Pbv-Mir-7-P4 Pfl-Mir-7 Pma-Mir-7-o4 Pmi-Mir-7 Rno-Mir-7-P4 Sha-Mir-7-P4 Sko-Mir-7 Spt-Mir-7-P4 Spu-Mir-7 Sto-Mir-7-P4 Tca-Mir-7 Tgu-Mir-7-P4 Xbo-Mir-7

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Mun_miRNA_loci)

7-P4_LR594642.1:85641122-85641382: 101-161 [+]

Precursor
(pre-Mir +30nt flank)

UGUUGGCGGUUAGAACUGUCCGGUCCUGUCUGGAAGACUAGUGAUUUUGUUGUUCUGACUUUAGUGUGACAACAAGUCCCUGUCUGCCGUACAGUGCAGGUCCCAACCUCUCCCUAGGACA

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Structure

        10        20         30            40        50        60 
UGUUGGCGGUUAGAACUGUCC  U     -   GA----|   U  U     U      CUGACU 
                     GG CCUGU CUG      AGAC AG GAUUU GUUGUU      \
                     CC GGACG GAC      UCUG UC CUGAA CAACAG      U
ACAGGAUCCCUCUCCAAC---  U     U   AUGCCG^   -  C     -      UGUGAU 
 .       110          100        90         80         70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Mun-Mir-7-P4_5p

mirBase accession

None

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

Get sequence

Star sequence

Mun-Mir-7-P4_3p* (predicted)

mirBase accession

None

Sequence

39- CAACAAGUCCCUGUCUGCCGUA -61

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