Mir-7-P1f

MirGeneDB ID

Mun-Mir-7-P1f

Family name

MIR-7 (all species)

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-7-P1e Mun-Mir-7-P2 Mun-Mir-7-P3 Mun-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P1 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P1 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P1 Cfa-Mir-7-P1 Cin-Mir-7 Cja-Mir-7-P1 Cli-Mir-7-P1 Cmi-Mir-7-P1 Cpi-Mir-7-P1 Cpo-Mir-7-P1 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P1 Esc-Mir-7 Ete-Mir-7-P1 Gga-Mir-7-P1 Gja-Mir-7-P1 Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P1 Isc-Mir-7 Laf-Mir-7-P1 Lan-Mir-7 Lch-Mir-7-P1 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P1 Lpo-Mir-7 Mdo-Mir-7-P1 Mgi-Mir-7 Mml-Mir-7-P1 Mmr-Mir-7-P1 Mmu-Mir-7-P1 Mom-Mir-7 Neu-Mir-7-P1 Npo-Mir-7 Oan-Mir-7-P1 Obi-Mir-7 Ocu-Mir-7-P1 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P1 Pau-Mir-7 Pbv-Mir-7-P1 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o1 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P1 Rph-Mir-7 Sha-Mir-7-P1 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P1 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P1 Tca-Mir-7 Tgu-Mir-7-P1 War-Mir-7 Xbo-Mir-7 Xtr-Mir-7-P1

Node of Origin (locus)

M. unicolor

Node of Origin (family)

Bilateria

Genome context
(GCA_901765095.2_aMicUni1.2)

LR594632.1: 739438352-739438416 [-]

Clustered miRNAs
(< 50kb from Mir-7-P1f)

Mir-7-P1f LR594632.1: 739438352-739438416 [-]
Mir-7-P1e LR594632.1: 739441942-739442005 [-]

Seed

GGAAGAC

Precursor
(pre-Mir +30nt flank)

GAUGGCAAUAGAUUCCAGGUUGGCCCCUUGUGGAAGACUAGUGAUUUUGUUGUUGUACGUUAAUUCACAUGACAACAAGUCACAGUCUUGUUCCAAAUGUGCACAUGCAAACAACCCGCUAAAAA

Get precursor sequence

Structure

        10        20         30           40        50        60  
GAUGGCAAUAGAUUCCAGGU  -  CCCUUG    ---|    A       U      GUACGUU 
                    UG GC      UGGA   AGACU GUGAUUU GUUGUU       A
                    AC CG      ACCU   UCUGA CACUGAA CAACAG       A
AAAAAUCGCCCAACAAACGU  A  UGUAA-    UGU^    -       -      UACACUU 
   120       110       100         90         80         70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Mun-Mir-7-P1f_5p

mirBase accession

None

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

Get sequence

Star sequence

Mun-Mir-7-P1f_3p* (predicted)

mirBase accession

None

Sequence

42- CAACAAGUCACAGUCUUGUUCCA -65

Get sequence