Mir-7-P1

MirGeneDB ID

Cfa-Mir-7-P1

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-7-2

Paralogues

Cfa-Mir-7-P2 Cfa-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P1 Ami-Mir-7-P1 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P1 Cgi-Mir-7 Cin-Mir-7 Cli-Mir-7-P1 Cmi-Mir-7-P1 Cpi-Mir-7-P1 Cpo-Mir-7-P1 Cte-Mir-7 Dan-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dre-Mir-7-P1a Dre-Mir-7-P1b Dsi-Mir-7 Dya-Mir-7 Esc-Mir-7 Ete-Mir-7-P1 Gga-Mir-7-P1 Gja-Mir-7-P1 Gmo-Mir-7-P1a Gmo-Mir-7-P1b Hme-Mir-7 Hsa-Mir-7-P1 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P1 Lgi-Mir-7 Loc-Mir-7-P1 Lpo-Mir-7 Mal-Mir-7-P1a Mdo-Mir-7-P1 Mml-Mir-7-P1 Mmu-Mir-7-P1 Mun-Mir-7-P1e Mun-Mir-7-P1f Npo-Mir-7 Oan-Mir-7-P1 Obi-Mir-7 Ocu-Mir-7-P1 Ovu-Mir-7 Pbv-Mir-7-P1 Pfl-Mir-7 Pma-Mir-7-o1 Pmi-Mir-7 Rno-Mir-7-P1 Sha-Mir-7-P1 Sko-Mir-7 Spt-Mir-7-P1 Spu-Mir-7 Sto-Mir-7-P1 Tca-Mir-7 Tgu-Mir-7-P1 Xbo-Mir-7 Xla-Mir-7-P1c Xla-Mir-7-P1d Xtr-Mir-7-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(canFam3_add)

chr3: 51802454-51802515 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGUGUGGGCGUGGACUGGCUCGCCCCAUCUGGAAGACUAGUGAUUUUGUUGUUGUCUCACUGCAUCCAACAACAAGUCCCAGUCUGCCACAUGGUGCUGGCCACUGCAGCAGGGUGUGGAG

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGUGUGGGCGUGGACU--|   C  C    C   A     AGU     U      GUCUCA 
                   GGCU GC CCAU UGG AGACU   GAUUU GUUGUU      C
                   CCGG CG GGUA ACC UCUGA   CUGAA CAACAA      U
GAGGUGUGGGACGACGUCA^   U  U    C   G     CC-     -      CCUACG 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Ce	Co	He	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-7-P1_5p

mirBase accession

MIMAT0006634

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

Get sequence

Proposed targets

TargetScanVert: cfa-miR-7
miRDB: MIMAT0006634

Star sequence

Cfa-Mir-7-P1_3p*

mirBase accession

None

Sequence

40- CAACAAGUCCCAGUCUGCCACA -62

Get sequence