MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-7-P1

Family name MIR-7 (all species)
Seed GGAAGAC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-7-P2  Loc-Mir-7-P3  Loc-Mir-7-P4  Loc-Mir-7-P4-as 
Orthologues Aae-Mir-7  Aca-Mir-7-P1  Ami-Mir-7-P1  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P1  Cfa-Mir-7-P1  Cgi-Mir-7  Cin-Mir-7  Cli-Mir-7-P1  Cmi-Mir-7-P1  Cpi-Mir-7-P1  Cpo-Mir-7-P1  Cte-Mir-7  Dan-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P1  Dre-Mir-7-P1a  Dre-Mir-7-P1b  Dsi-Mir-7  Dya-Mir-7  Esc-Mir-7  Ete-Mir-7-P1  Gga-Mir-7-P1  Gja-Mir-7-P1  Gmo-Mir-7-P1a  Gmo-Mir-7-P1b  Hme-Mir-7  Hsa-Mir-7-P1  Isc-Mir-7  Lan-Mir-7  Lch-Mir-7-P1  Lgi-Mir-7  Lpo-Mir-7  Mal-Mir-7-P1a  Mdo-Mir-7-P1  Mml-Mir-7-P1  Mmu-Mir-7-P1  Mun-Mir-7-P1e  Mun-Mir-7-P1f  Npo-Mir-7  Oan-Mir-7-P1  Obi-Mir-7  Ocu-Mir-7-P1  Ovu-Mir-7  Pbv-Mir-7-P1  Pfl-Mir-7  Pma-Mir-7-o1  Pmi-Mir-7  Rno-Mir-7-P1  Sha-Mir-7-P1  Sko-Mir-7  Spt-Mir-7-P1  Spu-Mir-7  Sto-Mir-7-P1  Tca-Mir-7  Tgu-Mir-7-P1  Xbo-Mir-7  Xla-Mir-7-P1c  Xla-Mir-7-P1d  Xtr-Mir-7-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)
LG3: 50991540-50991602 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUGUCUGACUUCCUGAUCUUGGCCGGUGUGGAAGACUAGUGAUUUUGUUGUUGUAAAUAUGUGCUCUGACAACAAGUCACAGUCUACCUCACUGAGUAAGGUCCAGUUCACCACAUGAUGU
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Structure
        10          20        30        40        50        60  
AGCUGUCUGACUUCCUG--|     GC     U  A     A       U      GUAAAUA 
                   AUCUUG  CGGUG GG AGACU GUGAUUU GUUGUU       \
                   UGGAAU  GUCAC CC UCUGA CACUGAA CAACAG       U
UGUAGUACACCACUUGACC^     GA     U  A     -       -      UCUCGUG 
 120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-7-P1_5p

mirBase accessionNone
Sequence
0- UGGAAGACUAGUGAUUUUGUUGUU -24
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Star sequence

Loc-Mir-7-P1_3p*

mirBase accessionNone
Sequence
41- CAACAAGUCACAGUCUACCUCA -63
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