Mir-7-P4-as

MirGeneDB ID

Loc-Mir-7-P4-as

Family name

MIR-7 (all species)

Seed

GGUAGAC

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-7-P1 Loc-Mir-7-P2 Loc-Mir-7-P3 Loc-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P4 Ami-Mir-7-P4 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P4 Cfa-Mir-7-P4 Cgi-Mir-7 Cin-Mir-7 Cli-Mir-7-P4 Cmi-Mir-7-P4 Cpi-Mir-7-P4 Cpo-Mir-7-P4 Cte-Mir-7 Dan-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P4 Dre-Mir-7-P4b Dsi-Mir-7 Dya-Mir-7 Esc-Mir-7 Ete-Mir-7-P4 Gga-Mir-7-P4 Gja-Mir-7-P4 Gmo-Mir-7-P4a Hme-Mir-7 Hsa-Mir-7-P4 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P4 Lgi-Mir-7 Lpo-Mir-7 Mal-Mir-7-P4a Mdo-Mir-7-P4 Mml-Mir-7-P4 Mmu-Mir-7-P4 Mun-Mir-7-P4 Npo-Mir-7 Obi-Mir-7 Ocu-Mir-7-P4 Ovu-Mir-7 Pbv-Mir-7-P4 Pfl-Mir-7 Pma-Mir-7-o4 Pmi-Mir-7 Rno-Mir-7-P4 Sha-Mir-7-P4 Sko-Mir-7 Spt-Mir-7-P4 Spu-Mir-7 Sto-Mir-7-P4 Tca-Mir-7 Tgu-Mir-7-P4 Xbo-Mir-7

Node of Origin (locus)

L. oculatus

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG19: 114192-114256 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UUCUCUGCUGCCUUUCCUCCCAGUGCUGGGUGGUAGACUAUGACUUGUUGUCCUUUUUAUCAGUUUAAAAACAACAAAAUCACUAGUCUUCCACUCAGUACUUGGGCAAUCAUCAUCGUUAUCAC

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Structure

        10         20         30        40          50        60 
UUCUCUGCUGCCUUUCCU-   -            U      -   C-|      CCUUUUUAU 
                   CCC AGUGCUGGGUGG AGACUA UGA  UUGUUGU         \
                   GGG UCAUGACUCACC UCUGAU ACU  AACAACA         C
CACUAUUGCUACUACUAAC   U            U      C   AA^      AAAAUUUGA 
   120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-7-P4-as_5p

mirBase accession

None

Sequence

0- UGGUAGACUAUGACUUGUUGUC -22

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Star sequence

Loc-Mir-7-P4-as_3p*

mirBase accession

None

Sequence

41- CAACAAAAUCACUAGUCUUCCACU -65

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