MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-7-P4-as

Family name MIR-7 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-7-P1  Loc-Mir-7-P2  Loc-Mir-7-P3  Loc-Mir-7-P4 
Orthologues Aae-Mir-7  Aca-Mir-7-P4  Aga-Mir-7  Agr-Mir-7  Ami-Mir-7-P4  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P4  Cfa-Mir-7-P4  Cin-Mir-7  Cja-Mir-7-P4  Cli-Mir-7-P4  Cmi-Mir-7-P4  Cpi-Mir-7-P4  Cpo-Mir-7-P4  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P4  Dre-Mir-7-P4b  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Eca-Mir-7-P4  Esc-Mir-7  Ete-Mir-7-P4  Gga-Mir-7-P4  Gja-Mir-7-P4  Gmo-Mir-7-P4a  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Hsa-Mir-7-P4  Isc-Mir-7  Laf-Mir-7-P4  Lan-Mir-7  Lch-Mir-7-P4  Lgi-Mir-7  Llo-Mir-7  Lpo-Mir-7  Mal-Mir-7-P4a  Mdo-Mir-7-P4  Mgi-Mir-7  Mml-Mir-7-P4  Mmr-Mir-7-P4  Mmu-Mir-7-P4  Mom-Mir-7  Mun-Mir-7-P4  Neu-Mir-7-P4  Npo-Mir-7  Obi-Mir-7  Ocu-Mir-7-P4  Ofu-Mir-7  Ovu-Mir-7  Pab-Mir-7-P4  Pau-Mir-7  Pbv-Mir-7-P4  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o4  Pmi-Mir-7  Pve-Mir-7  Rno-Mir-7-P4  Rph-Mir-7  Sha-Mir-7-P4  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spt-Mir-7-P4  Spu-Mir-7  Sro-Mir-7  Sto-Mir-7-P4  Tca-Mir-7  Tgu-Mir-7-P4  War-Mir-7  Xbo-Mir-7 
Node of Origin (locus) L. oculatus
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG19: 114192-114256 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-7-P4-as)		 Mir-7-P4-as LG19: 114192-114256 [-] Ensembl
Mir-7-P4 LG19: 114194-114258 [+] Ensembl
Seed GGUAGAC
Precursor
(pre-Mir +30nt flank)		 
UUCUCUGCUGCCUUUCCUCCCAGUGCUGGGUGGUAGACUAUGACUUGUUGUCCUUUUUAUCAGUUUAAAAACAACAAAAUCACUAGUCUUCCACUCAGUACUUGGGCAAUCAUCAUCGUUAUCAC
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Structure
        10         20         30        40          50        60 
UUCUCUGCUGCCUUUCCU-   -            U      -   C-|      CCUUUUUAU 
                   CCC AGUGCUGGGUGG AGACUA UGA  UUGUUGU         \
                   GGG UCAUGACUCACC UCUGAU ACU  AACAACA         C
CACUAUUGCUACUACUAAC   U            U      C   AA^      AAAAUUUGA 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-7-P4-as_5p
mirBase accessionNone
Sequence 
0- UGGUAGACUAUGACUUGUUGUC -22
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Star sequence

Loc-Mir-7-P4-as_3p*
mirBase accessionNone
Sequence 
41- CAACAAAAUCACUAGUCUUCCACU -65
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