MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-7-P4

Family name MIR-7 (all species)
Seed GGAAGAC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-7b
Paralogues Mmu-Mir-7-P1  Mmu-Mir-7-P2 
Orthologues Aae-Mir-7  Aca-Mir-7-P4  Ami-Mir-7-P4  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P4  Cfa-Mir-7-P4  Cgi-Mir-7  Cin-Mir-7  Cli-Mir-7-P4  Cmi-Mir-7-P4  Cpi-Mir-7-P4  Cpo-Mir-7-P4  Cte-Mir-7  Dan-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P4  Dre-Mir-7-P4b  Dsi-Mir-7  Dya-Mir-7  Esc-Mir-7  Ete-Mir-7-P4  Gga-Mir-7-P4  Gja-Mir-7-P4  Gmo-Mir-7-P4a  Hme-Mir-7  Hsa-Mir-7-P4  Isc-Mir-7  Lan-Mir-7  Lch-Mir-7-P4  Lgi-Mir-7  Loc-Mir-7-P4  Loc-Mir-7-P4-as  Lpo-Mir-7  Mal-Mir-7-P4a  Mdo-Mir-7-P4  Mml-Mir-7-P4  Mun-Mir-7-P4  Npo-Mir-7  Obi-Mir-7  Ocu-Mir-7-P4  Ovu-Mir-7  Pbv-Mir-7-P4  Pfl-Mir-7  Pma-Mir-7-o4  Pmi-Mir-7  Rno-Mir-7-P4  Sha-Mir-7-P4  Sko-Mir-7  Spt-Mir-7-P4  Spu-Mir-7  Sto-Mir-7-P4  Tca-Mir-7  Tgu-Mir-7-P4  Xbo-Mir-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(mm10)
chr17: 56243017-56243076 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGAGCGGAGUACGUGAGCCAGUGCUAUGUGGAAGACUUGUGAUUUUGUUGUUCUGAUAUGAUAUGACAACAAGUCACAGCCAGCCUCAUAGCGUGGACUCCUAUCACCUUUCUCCUGA
Get precursor sequence
Structure
        10           20        30        40        50        60
GAGGAGCGGAGUACGUG--  -|  G       U  AAGAC         U      CUGAU 
                   AG CCA UGCUAUG GG     UUGUGAUUU GUUGUU     A
                   UC GGU GCGAUAC CC     GACACUGAA CAACAG     U
AGUCCUCUUUCCACUAUCC  A^  -       U  GACC-         -      UAUAG 
.       110       100         90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-7-P4_5p

mirBase accessionMIMAT0000678
Sequence
0- UGGAAGACUUGUGAUUUUGUUGUU -24
Get sequence
Proposed targets microrna.org: MIMAT0000678
TargetScanVert: mmu-miR-7b-5p
miRDB: MIMAT0000678
Star sequence

Mmu-Mir-7-P4_3p*

mirBase accessionMIMAT0017071
Sequence
38- CAACAAGUCACAGCCAGCCUCA -60
Get sequence
Proposed targets TargetScanVert: mmu-miR-7b-3p
miRDB: MIMAT0017071