| MirGeneDB ID | Dre-Mir-7-P4b |
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| Family name |
MIR-7 (all species) |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-7a-3
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| Paralogues |
Dre-Mir-7-P1a
Dre-Mir-7-P1b
Dre-Mir-7-P2b
Dre-Mir-7-P3
|
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| Orthologues |
Aae-Mir-7
Aca-Mir-7-P4
Aga-Mir-7
Agr-Mir-7
Ami-Mir-7-P4
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Bta-Mir-7-P4
Cfa-Mir-7-P4
Cin-Mir-7
Cja-Mir-7-P4
Cli-Mir-7-P4
Cmi-Mir-7-P4
Cpi-Mir-7-P4
Cpo-Mir-7-P4
Cte-Mir-7
Dan-Mir-7
Dlo-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dno-Mir-7-P4
Dsi-Mir-7
Dya-Mir-7
Eba-Mir-7
Eca-Mir-7-P4
Esc-Mir-7
Ete-Mir-7-P4
Gga-Mir-7-P4
Gja-Mir-7-P4
Gpa-Mir-7
Gsa-Mir-7
Gsp-Mir-7
Hme-Mir-7
Hmi-Mir-7
Hru-Mir-7
Hsa-Mir-7-P4
Isc-Mir-7
Laf-Mir-7-P4
Lan-Mir-7
Lch-Mir-7-P4
Lgi-Mir-7
Llo-Mir-7
Loc-Mir-7-P4
Loc-Mir-7-P4-as
Lpo-Mir-7
Mdo-Mir-7-P4
Mgi-Mir-7
Mml-Mir-7-P4
Mmr-Mir-7-P4
Mmu-Mir-7-P4
Mom-Mir-7
Mun-Mir-7-P4
Neu-Mir-7-P4
Npo-Mir-7
Obi-Mir-7
Ocu-Mir-7-P4
Ofu-Mir-7
Ovu-Mir-7
Pab-Mir-7-P4
Pau-Mir-7
Pbv-Mir-7-P4
Pca-Mir-7
Pcr-Mir-7
Pdu-Mir-7
Pfl-Mir-7
Pma-Mir-7-o4
Pmi-Mir-7
Pve-Mir-7
Rno-Mir-7-P4
Rph-Mir-7
Sha-Mir-7-P4
Sko-Mir-7
Sne-Mir-7
Snu-Mir-7
Spt-Mir-7-P4
Spu-Mir-7
Sro-Mir-7
Sto-Mir-7-P4
Tca-Mir-7
Tgu-Mir-7-P4
War-Mir-7
Xbo-Mir-7
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(danRer11) |
chr8: 10232-10295 [+]
UCSC
Ensembl
|
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| Seed |
GGAAGAC |
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Precursor
(pre-Mir +30nt flank) |
GUGUGUGUGUGUGUUCUGCCCUCUGCGGAGUGGAAGACUAGUGAUUUUGUUGUGAAAAUGAACAAAAACCAACAACAAACCGCAGUCGUCCUCUCAGCACGGGGCCCACACCUGCAGAGCACAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGUGUGUGUGUGUUCU--| C G U A A AU GAAAAUGA
GCCCU UGC GAG GGA GACU GUG UUUGUUGU A
CGGGG ACG CUC CCU CUGA CGC AAACAACA C
GACACGAGACGUCCACACC^ C A U G - C- ACCAAAAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Mir-7-P4b_5p |
| mirBase accession | MIMAT0001266 |
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| Sequence |
0- UGGAAGACUAGUGAUUUUGUUGU -23
Get sequence
|
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| Proposed targets |
TargetScanFish: dre-miR-7a
|
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| Star sequence |
Dre-Mir-7-P4b_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- AACAAACCGCAGUCGUCCUCU -64
Get sequence
|
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