MirGeneDB ID | Tgu-Mir-7-P4 |
Family name |
MIR-7 (all species) |
Seed |
GGAAGAC |
Species |
Zebra finch (Taeniopygia guttata) |
MiRBase ID |
tgu-mir-7-4
|
Paralogues |
Tgu-Mir-7-P1
Tgu-Mir-7-P2
|
Orthologues |
Aae-Mir-7
Aca-Mir-7-P4
Ami-Mir-7-P4
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Bta-Mir-7-P4
Cfa-Mir-7-P4
Cgi-Mir-7
Cin-Mir-7
Cli-Mir-7-P4
Cmi-Mir-7-P4
Cpi-Mir-7-P4
Cpo-Mir-7-P4
Cte-Mir-7
Dan-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dno-Mir-7-P4
Dre-Mir-7-P4b
Dsi-Mir-7
Dya-Mir-7
Esc-Mir-7
Ete-Mir-7-P4
Gga-Mir-7-P4
Gja-Mir-7-P4
Gmo-Mir-7-P4a
Hme-Mir-7
Hsa-Mir-7-P4
Isc-Mir-7
Lan-Mir-7
Lch-Mir-7-P4
Lgi-Mir-7
Loc-Mir-7-P4
Loc-Mir-7-P4-as
Lpo-Mir-7
Mal-Mir-7-P4a
Mdo-Mir-7-P4
Mml-Mir-7-P4
Mmu-Mir-7-P4
Mun-Mir-7-P4
Npo-Mir-7
Obi-Mir-7
Ocu-Mir-7-P4
Ovu-Mir-7
Pbv-Mir-7-P4
Pfl-Mir-7
Pma-Mir-7-o4
Pmi-Mir-7
Rno-Mir-7-P4
Sha-Mir-7-P4
Sko-Mir-7
Spt-Mir-7-P4
Spu-Mir-7
Sto-Mir-7-P4
Tca-Mir-7
Xbo-Mir-7
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (TaeGut1_add) |
28: 1975774-1975835 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAAGCGCUGCUUUCCUGGCCUAGCUCUGUGUGGAAGACUAGUGAUUUUGUUGUUGUGUUUGUAAAGGUGACAACAAAUCAUAGCCUGCCAUACAGCCCAGGCUGCCACGGCCCAGCUGUGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAAGCGCUGCUUUCCUG---| AGCU A A G U GUGUUU
GCCU CUGUGUGG AG CUA UGAUUU GUUGUU G
CGGA GACAUACC UC GAU ACUAAA CAACAG U
ACGUGUCGACCCGGCACCGU^ CCC- G C - - UGGAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Tgu-Mir-7-P4_5p |
mirBase accession | MIMAT0014510 |
Sequence |
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
|
Star sequence |
Tgu-Mir-7-P4_3p* |
mirBase accession | MIMAT0031020 |
Sequence |
40- CAACAAAUCAUAGCCUGCCAUA -62
Get sequence
|