MirGeneDB

MirGeneDB ID

Sto-Mir-7-P1

Family name MIR-7 (all species)
Seed GGAAGAC
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-7-P2  Sto-Mir-7-P3 
Orthologues Aae-Mir-7  Aca-Mir-7-P1  Ami-Mir-7-P1  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bta-Mir-7-P1  Cfa-Mir-7-P1  Cgi-Mir-7  Cin-Mir-7  Cli-Mir-7-P1  Cpi-Mir-7-P1  Cpo-Mir-7-P1  Cte-Mir-7  Dan-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P1  Dre-Mir-7-o1  Dre-Mir-7-P1  Ete-Mir-7-P1  Gga-Mir-7-P1a  Gga-Mir-7-P1b  Hme-Mir-7  Hsa-Mir-7-P1  Isc-Mir-7  Lan-Mir-7  Lgi-Mir-7  Mdo-Mir-7-P1  Mml-Mir-7-P1  Mmu-Mir-7-P1  Oan-Mir-7-P1  Ocu-Mir-7-P1  Pfl-Mir-7  Pmi-Mir-7  Rno-Mir-7-P1  Sha-Mir-7-P1  Sko-Mir-7  Spu-Mir-7  Tgu-Mir-7-P1  Xtr-Mir-7-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(miRNA_loci_genome)
BFAA01004379.1: 143589-143651 [-]
Precursor
(pre-Mir +30nt flank)
AGUCAACUUGGAUUGUGGUCUGGUUCUGUGUGGAAGACUAGUGAUUUUGUUGUUUUUGACAGUUGGAUUGACAACAAAUCACAGUCUGCCAUAUAGCGCAGAUCAUAUCUCUCCCGAAAGUUC
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Structure
        10           20        30        40        50        60  
AGUCAACUUGGAUUGUG---|    GUU        A     A       U      UUUGACA 
                    GUCUG   CUGUGUGG AGACU GUGAUUU GUUGUU       \
                    UAGAC   GAUAUACC UCUGA CACUAAA CAACAG       G
CUUGAAAGCCCUCUCUAUAC^    GC-        G     -       -      UUAGGUU 
 120       110       100         90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Sto-Mir-7-P1_5p

MirBase accessionNone
Sequence
0- UGGAAGACUAGUGAUUUUGUUGUU -24
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Star sequence

Sto-Mir-7-P1_3p*

MirBase accessionNone
Sequence
41- CAACAAAUCACAGUCUGCCAUA -63
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