MirGeneDB

MirGeneDB ID

Aca-Mir-7-P1

Family name MIR-7 (all species)
Seed GGAAGAC
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-7-2
Paralogues Aca-Mir-7-P2  Aca-Mir-7-P3 
Orthologues Aae-Mir-7  Ami-Mir-7-P1  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bta-Mir-7-P1  Cfa-Mir-7-P1  Cgi-Mir-7  Cin-Mir-7  Cli-Mir-7-P1  Cpi-Mir-7-P1  Cpo-Mir-7-P1  Cte-Mir-7  Dan-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P1  Dre-Mir-7-o1  Dre-Mir-7-P1  Ete-Mir-7-P1  Gga-Mir-7-P1a  Gga-Mir-7-P1b  Hme-Mir-7  Hsa-Mir-7-P1  Isc-Mir-7  Lan-Mir-7  Lgi-Mir-7  Mdo-Mir-7-P1  Mml-Mir-7-P1  Mmu-Mir-7-P1  Oan-Mir-7-P1  Ocu-Mir-7-P1  Pfl-Mir-7  Pmi-Mir-7  Rno-Mir-7-P1  Sha-Mir-7-P1  Sko-Mir-7  Spu-Mir-7  Sto-Mir-7-P1  Tgu-Mir-7-P1  Xtr-Mir-7-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(anoCar2)
2: 42574659-42574722 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUUUCAGUGGAUGUUGGCCUAGUUCUGUGUGGAAGACUAGUGAUUUUGUUGUUUUUAGAUAACUAAAUUGACAACAAAUCGCAGUCUACCAUAUGGCACAGGCCAUAACCUCUACAGGACAAG
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Structure
        10           20        30        40        50        60  
GAUUUCAGUGGAUGUUG---|   A  U        A     A       U      UUUAGAU 
                    GCCU GU CUGUGUGG AGACU GUGAUUU GUUGUU       A
                    CGGA CA GGUAUACC UCUGA CGCUAAA CAACAG       A
GAACAGGACAUCUCCAAUAC^   -  C        A     -       -      UUAAAUC 
  120       110        100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Mir-7-P1_5p

MirBase accessionMIMAT0021983
Sequence
0- UGGAAGACUAGUGAUUUUGUUGUU -24
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Star sequence

Aca-Mir-7-P1_3p*

MirBase accessionMIMAT0021985
Sequence
42- CAACAAAUCGCAGUCUACCAUA -64
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