Mir-7-P1

MirGeneDB ID

Ami-Mir-7-P1

Family name

MIR-7 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-7a-2

Paralogues

Ami-Mir-7-P2 Ami-Mir-7-P3 Ami-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P1 Aga-Mir-7 Agr-Mir-7 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P1 Cfa-Mir-7-P1 Cin-Mir-7 Cja-Mir-7-P1 Cli-Mir-7-P1 Cmi-Mir-7-P1 Cpi-Mir-7-P1 Cpo-Mir-7-P1 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P1 Dre-Mir-7-P1a Dre-Mir-7-P1b Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P1 Esc-Mir-7 Ete-Mir-7-P1 Gga-Mir-7-P1 Gja-Mir-7-P1 Gmo-Mir-7-P1a Gmo-Mir-7-P1b Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P1 Isc-Mir-7 Laf-Mir-7-P1 Lan-Mir-7 Lch-Mir-7-P1 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P1 Lpo-Mir-7 Mal-Mir-7-P1a Mdo-Mir-7-P1 Mgi-Mir-7 Mml-Mir-7-P1 Mmr-Mir-7-P1 Mmu-Mir-7-P1 Mom-Mir-7 Mun-Mir-7-P1e Mun-Mir-7-P1f Neu-Mir-7-P1 Npo-Mir-7 Oan-Mir-7-P1 Obi-Mir-7 Ocu-Mir-7-P1 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P1 Pau-Mir-7 Pbv-Mir-7-P1 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o1 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P1 Rph-Mir-7 Sha-Mir-7-P1 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P1 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P1 Tca-Mir-7 Tgu-Mir-7-P1 War-Mir-7 Xbo-Mir-7 Xla-Mir-7-P1c Xla-Mir-7-P1d Xtr-Mir-7-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713709.1: 11914595-11914658 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-7-P1)

Mir-7-P1 NW_017713709.1: 11914595-11914658 [+] UCSC
Mir-1720 NW_017713709.1: 11914848-11914910 [+] UCSC

Seed

GGAAGAC

Precursor
(pre-Mir +30nt flank)

CUCUACUGAGCUCUUCUGCCUGACCCUGUAUGGAAGACUAGUGAUUUUGUUGUUCUAUGGCUCAUCUCACGACAACAAGUCACAGUCUGCCUUAUGGUGCAUGGCCUCGCUCACCCACAGCUCG

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Structure

        10          20         30        40        50        60  
CUCUACUGAGCUCUUCU--   -| AC  U   U  A     A       U     UCUAUGGC 
                   GCC UG  CC GUA GG AGACU GUGAUUU GUUGU        U
                   CGG AC  GG UAU CC UCUGA CACUGAA CAACA        C
GCUCGACACCCACUCGCUC   U^ GU  -   U  G     -       -     GCACUCUA 
  120       110       100         90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ami-Mir-7-P1_5p

mirBase accession

MIMAT0038023

Sequence

0- UGGAAGACUAGUGAUUUUGUUGU -23

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Star sequence

Ami-Mir-7-P1_3p*

mirBase accession

MIMAT0038025

Sequence

42- CAACAAGUCACAGUCUGCCUUA -64

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