MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-7-P1d

Family name MIR-7 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-7-P1c  Xla-Mir-7-P2e  Xla-Mir-7-P2f  Xla-Mir-7-P3a  Xla-Mir-7-P3b 
Orthologues Aae-Mir-7  Aca-Mir-7-P1  Aga-Mir-7  Agr-Mir-7  Ami-Mir-7-P1  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Bta-Mir-7-P1  Cfa-Mir-7-P1  Cin-Mir-7  Cja-Mir-7-P1  Cli-Mir-7-P1  Cmi-Mir-7-P1  Cpi-Mir-7-P1  Cpo-Mir-7-P1  Cte-Mir-7  Dan-Mir-7  Dlo-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dno-Mir-7-P1  Dsi-Mir-7  Dya-Mir-7  Eba-Mir-7  Eca-Mir-7-P1  Esc-Mir-7  Ete-Mir-7-P1  Gga-Mir-7-P1  Gja-Mir-7-P1  Gpa-Mir-7  Gsa-Mir-7  Gsp-Mir-7  Hme-Mir-7  Hmi-Mir-7  Hru-Mir-7  Hsa-Mir-7-P1  Isc-Mir-7  Laf-Mir-7-P1  Lan-Mir-7  Lch-Mir-7-P1  Lgi-Mir-7  Llo-Mir-7  Loc-Mir-7-P1  Lpo-Mir-7  Mdo-Mir-7-P1  Mgi-Mir-7  Mml-Mir-7-P1  Mmr-Mir-7-P1  Mmu-Mir-7-P1  Mom-Mir-7  Neu-Mir-7-P1  Npo-Mir-7  Oan-Mir-7-P1  Obi-Mir-7  Ocu-Mir-7-P1  Ofu-Mir-7  Ovu-Mir-7  Pab-Mir-7-P1  Pau-Mir-7  Pbv-Mir-7-P1  Pca-Mir-7  Pcr-Mir-7  Pdu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o1  Pmi-Mir-7  Pve-Mir-7  Rno-Mir-7-P1  Rph-Mir-7  Sha-Mir-7-P1  Sko-Mir-7  Sne-Mir-7  Snu-Mir-7  Spt-Mir-7-P1  Spu-Mir-7  Sro-Mir-7  Sto-Mir-7-P1  Tca-Mir-7  Tgu-Mir-7-P1  War-Mir-7  Xbo-Mir-7  Xtr-Mir-7-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030729.1: 43281516-43281579 [+] UCSC Ensembl
Seed GGAAGAC
Precursor
(pre-Mir +30nt flank)		 
CCUAGAGAGGAGGUACAGGCUGGCUCUUUGUGGAAGACUAGUGAUUUUGUUGUUGUAAGUCUAUUUGCAUGACAACAAGUCACAGUCUGCCUCACAGUGCCCAGCAAUAACAGCGCUACCGAAG
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Structure
        10         20         30        40        50        60  
CCUAGAGAGGAGGUACAG-   -|  U  U  U  A     A       U      GUAAGUC 
                   GCU GGC CU UG GG AGACU GUGAUUU GUUGUU       U
                   CGA CCG GA AC CC UCUGA CACUGAA CAACAG       A
GAAGCCAUCGCGACAAUAA   C^  U  C  U  G     -       -      UACGUUU 
  120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-7-P1d_5p
mirBase accessionNone
Sequence 
0- UGGAAGACUAGUGAUUUUGUUGUU -24
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Star sequence

Xla-Mir-7-P1d_3p*
mirBase accessionNone
Sequence 
42- CAACAAGUCACAGUCUGCCUCA -64
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