Mir-7-P3

MirGeneDB ID

Tni-Mir-7-P3

Family name

MIR-7 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-7

Paralogues

Orthologues

Aae-Mir-7 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P3 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Cin-Mir-7 Cli-Mir-7-P3 Cpi-Mir-7-P3 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dre-Mir-7-P3 Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Esc-Mir-7 Gmo-Mir-7-P3 Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P3 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P3 Lpo-Mir-7 Mal-Mir-7-P3 Mgi-Mir-7 Mom-Mir-7 Mun-Mir-7-P3 Npo-Mir-7 Obi-Mir-7 Ofu-Mir-7 Ovu-Mir-7 Pau-Mir-7 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o3 Pmi-Mir-7 Pve-Mir-7 Rph-Mir-7 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P3 Spu-Mir-7 Sro-Mir-7 Tca-Mir-7 War-Mir-7 Xbo-Mir-7 Xla-Mir-7-P3a Xla-Mir-7-P3b Xtr-Mir-7-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

8: 1820450-1820510 [+] UCSC Ensembl

Seed

GGAAGAC

Precursor
(pre-Mir +30nt flank)

UAUUUCACAACAGCACGGUCCGGAGCAGCGUGGAAGACUAGUGAUUUUGUUGUUUGGUGUCAAAAUUGACAACAAAUCAUUGUCUUCCUCACUGCCCCGAGACGAUGCCGCAUCUGUGAAA

Get precursor sequence

Structure

        10         20         30        40        50        60 
UAUUUCACAACAGCACG-   -|  A    CGU       U        U     UUGGUGU 
                  GUC CGG GCAG   GGAAGAC AGUGAUUU GUUGU       \
                  CAG GCC CGUC   CCUUCUG UUACUAAA CAACA       C
AAAGUGUCUACGCCGUAG   A^  C    ACU       -        -     GUUAAAA 
 .       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-7-P3_5p

mirBase accession

MIMAT0003010

Sequence

0- UGGAAGACUAGUGAUUUUGUUGU -23

Get sequence

Star sequence

Tni-Mir-7-P3_3p* (predicted)

mirBase accession

None

Sequence

40- AACAAAUCAUUGUCUUCCUCA -61

Get sequence