MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-7-P3

Family name MIR-7 (all species)
Seed GGAAGAC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-7-3
Paralogues Xtr-Mir-7-P1  Xtr-Mir-7-P2 
Orthologues Aae-Mir-7  Ami-Mir-7-P3  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Cgi-Mir-7  Cin-Mir-7  Cli-Mir-7-P3  Cpi-Mir-7-P3  Cte-Mir-7  Dan-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dre-Mir-7-P3  Dsi-Mir-7  Dya-Mir-7  Esc-Mir-7  Gmo-Mir-7-P3  Hme-Mir-7  Isc-Mir-7  Lan-Mir-7  Lch-Mir-7-P3  Lgi-Mir-7  Loc-Mir-7-P3  Lpo-Mir-7  Mal-Mir-7-P3  Mun-Mir-7-P3  Npo-Mir-7  Obi-Mir-7  Ovu-Mir-7  Pfl-Mir-7  Pma-Mir-7-o3  Pmi-Mir-7  Sko-Mir-7  Spt-Mir-7-P3  Spu-Mir-7  Tca-Mir-7  Tni-Mir-7-P3  Xbo-Mir-7  Xla-Mir-7-P3a  Xla-Mir-7-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr8: 111833887-111833952 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGCUCUUCACUUUAUUUCUGGGUCGGUUUGGAAGACUAGUGAUUUUGUUGUUUUUAUAAAAGUUUGUCACAAACAGCAAAUCGUAGUCUCCACUCUGCCCCAGGAGCCUGCCCUUCUGUAUCUG
Get precursor sequence
Structure
        10          20        30        40        50        60    
CUGGCUCUUCACUUUAU--|      U   UU    A     G      U      UUUAUAAAA 
                   UUCUGGG CGG  UGGA GACUA UGAUUU GUUGUU         \
                   AGGACCC GUC  ACCU CUGAU GCUAAA CGACAA         G
GUCUAUGUCUUCCCGUCCG^      C   UC    -     -      -      ACACUGUUU 
    120       110       100         90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-7-P3_5p
mirBase accessionMIMAT0003552
Sequence 
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
Proposed targets TargetScanVert: xtr-miR-7
Star sequence

Xtr-Mir-7-P3_3p*
mirBase accessionNone
Sequence 
44- ACAGCAAAUCGUAGUCUCCACU -66
Get sequence